miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13278 5' -56.3 NC_003409.1 + 112941 0.66 0.855551
Target:  5'- -gGCC-CUUGCcaagcGGGCGCGUuGCGCUc -3'
miRNA:   3'- uaUGGaGAGCGc----UUCGCGCAuCGCGA- -5'
13278 5' -56.3 NC_003409.1 + 111385 0.66 0.84754
Target:  5'- uUGCCUCUCcCGAcGGuUGCGUGGgCGCc -3'
miRNA:   3'- uAUGGAGAGcGCU-UC-GCGCAUC-GCGa -5'
13278 5' -56.3 NC_003409.1 + 127108 0.66 0.84754
Target:  5'- --uCCUCUCGUuaaGGGCGCGccGGUGCUc -3'
miRNA:   3'- uauGGAGAGCGc--UUCGCGCa-UCGCGA- -5'
13278 5' -56.3 NC_003409.1 + 132796 0.67 0.822323
Target:  5'- uUACCUggcaCGCGcacAGGCGCGcGGCGCg -3'
miRNA:   3'- uAUGGAga--GCGC---UUCGCGCaUCGCGa -5'
13278 5' -56.3 NC_003409.1 + 33878 0.68 0.728012
Target:  5'- -aGCCaUCauugCGUGAAGCuuGUGGCGCUg -3'
miRNA:   3'- uaUGG-AGa---GCGCUUCGcgCAUCGCGA- -5'
13278 5' -56.3 NC_003409.1 + 83851 0.68 0.737987
Target:  5'- -cGCCgcaaagUCUCGCGggGacgggGCGUGGgGCUc -3'
miRNA:   3'- uaUGG------AGAGCGCuuCg----CGCAUCgCGA- -5'
13278 5' -56.3 NC_003409.1 + 109723 0.69 0.707815
Target:  5'- -cGCUUCUgGCGuGGCGaaGUGGCGCa -3'
miRNA:   3'- uaUGGAGAgCGCuUCGCg-CAUCGCGa -5'
13278 5' -56.3 NC_003409.1 + 22179 0.7 0.614713
Target:  5'- uUACCgg-CGCGAAGCGCuacGCGCUu -3'
miRNA:   3'- uAUGGagaGCGCUUCGCGcauCGCGA- -5'
13278 5' -56.3 NC_003409.1 + 22354 1.05 0.003717
Target:  5'- gAUACCUCUCGCGAAGCGCGUAGCGCUu -3'
miRNA:   3'- -UAUGGAGAGCGCUUCGCGCAUCGCGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.