miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13279 3' -53.8 NC_003409.1 + 23812 1.14 0.002094
Target:  5'- gGGUAUACCCAGCUGGGUUCACCCACCu -3'
miRNA:   3'- -CCAUAUGGGUCGACCCAAGUGGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 119397 0.95 0.038809
Target:  5'- aGGUAUACCCAGCUGGGUcUACCCAgCu -3'
miRNA:   3'- -CCAUAUGGGUCGACCCAaGUGGGUgG- -5'
13279 3' -53.8 NC_003409.1 + 119237 0.88 0.109362
Target:  5'- gGGUAgACCCAGCUGGGUaUACCUACUg -3'
miRNA:   3'- -CCAUaUGGGUCGACCCAaGUGGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 23653 0.86 0.135142
Target:  5'- gGGUGaACCCAGCUGGGUaUACCCAgCu -3'
miRNA:   3'- -CCAUaUGGGUCGACCCAaGUGGGUgG- -5'
13279 3' -53.8 NC_003409.1 + 23613 0.84 0.184365
Target:  5'- aGGUAUACCCAGCUGGGUaaUCcaguagguauACCCAg- -3'
miRNA:   3'- -CCAUAUGGGUCGACCCA--AG----------UGGGUgg -5'
13279 3' -53.8 NC_003409.1 + 23784 0.84 0.189115
Target:  5'- gGGUAuaccuacuggauUACCCAGCUGGGUaUACCUACUg -3'
miRNA:   3'- -CCAU------------AUGGGUCGACCCAaGUGGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 119196 0.76 0.506605
Target:  5'- cGUAUACCCAGCUGuGUUUACgCAgCg -3'
miRNA:   3'- cCAUAUGGGUCGACcCAAGUGgGUgG- -5'
13279 3' -53.8 NC_003409.1 + 130745 0.75 0.536493
Target:  5'- aGGUAcucucccuggGCCCAGCUGGGcagCACCguCCc -3'
miRNA:   3'- -CCAUa---------UGGGUCGACCCaa-GUGGguGG- -5'
13279 3' -53.8 NC_003409.1 + 119326 0.75 0.566972
Target:  5'- cGUAaACCCGGCUGGGUaaAUCCAgCu -3'
miRNA:   3'- cCAUaUGGGUCGACCCAagUGGGUgG- -5'
13279 3' -53.8 NC_003409.1 + 113570 0.72 0.70133
Target:  5'- cGGUGgGCCguCAGCUGGGccUCAUCCaaACCa -3'
miRNA:   3'- -CCAUaUGG--GUCGACCCa-AGUGGG--UGG- -5'
13279 3' -53.8 NC_003409.1 + 130915 0.72 0.711495
Target:  5'- cGGUGcUGCCCAGCUGGG----CCCAg- -3'
miRNA:   3'- -CCAU-AUGGGUCGACCCaaguGGGUgg -5'
13279 3' -53.8 NC_003409.1 + 109299 0.71 0.741536
Target:  5'- uGUcUACCUAGCUGGGcgCGCCguCUu -3'
miRNA:   3'- cCAuAUGGGUCGACCCaaGUGGguGG- -5'
13279 3' -53.8 NC_003409.1 + 38495 0.71 0.751365
Target:  5'- uGUGUACCaacauagAGCUGGGcgaaaugaUCGCCCGCUu -3'
miRNA:   3'- cCAUAUGGg------UCGACCCa-------AGUGGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 119166 0.71 0.761087
Target:  5'- uGGauuUACCCAGCcGGGUUUACgCAgCu -3'
miRNA:   3'- -CCau-AUGGGUCGaCCCAAGUGgGUgG- -5'
13279 3' -53.8 NC_003409.1 + 24027 0.71 0.761087
Target:  5'- cGGUAgauggggGCCgGGaggaUGGGgcccCGCCCACCg -3'
miRNA:   3'- -CCAUa------UGGgUCg---ACCCaa--GUGGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 90403 0.71 0.77069
Target:  5'- uGUGUACUUAGCUGGGg-CACUCgagGCCc -3'
miRNA:   3'- cCAUAUGGGUCGACCCaaGUGGG---UGG- -5'
13279 3' -53.8 NC_003409.1 + 118295 0.7 0.807736
Target:  5'- aGGUu--CCCggggaggaGGCUGGGgugCGCCgCGCCg -3'
miRNA:   3'- -CCAuauGGG--------UCGACCCaa-GUGG-GUGG- -5'
13279 3' -53.8 NC_003409.1 + 64862 0.7 0.816609
Target:  5'- ----aGCCCAGCccGGGUUCAUCC-UCa -3'
miRNA:   3'- ccauaUGGGUCGa-CCCAAGUGGGuGG- -5'
13279 3' -53.8 NC_003409.1 + 34849 0.7 0.833829
Target:  5'- uGGUGUGCaCCGGCgUGGGaaaCGCCC-Cg -3'
miRNA:   3'- -CCAUAUG-GGUCG-ACCCaa-GUGGGuGg -5'
13279 3' -53.8 NC_003409.1 + 119159 0.69 0.849489
Target:  5'- aGUAUAUccauuuauggaaaCCAGCUGGG-UCACuCUACUg -3'
miRNA:   3'- cCAUAUG-------------GGUCGACCCaAGUG-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.