miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13279 3' -53.8 NC_003409.1 + 13161 0.66 0.953579
Target:  5'- --gAUACCCGGCga--UUCGCuCCACCu -3'
miRNA:   3'- ccaUAUGGGUCGacccAAGUG-GGUGG- -5'
13279 3' -53.8 NC_003409.1 + 23613 0.84 0.184365
Target:  5'- aGGUAUACCCAGCUGGGUaaUCcaguagguauACCCAg- -3'
miRNA:   3'- -CCAUAUGGGUCGACCCA--AG----------UGGGUgg -5'
13279 3' -53.8 NC_003409.1 + 23653 0.86 0.135142
Target:  5'- gGGUGaACCCAGCUGGGUaUACCCAgCu -3'
miRNA:   3'- -CCAUaUGGGUCGACCCAaGUGGGUgG- -5'
13279 3' -53.8 NC_003409.1 + 23784 0.84 0.189115
Target:  5'- gGGUAuaccuacuggauUACCCAGCUGGGUaUACCUACUg -3'
miRNA:   3'- -CCAU------------AUGGGUCGACCCAaGUGGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 23812 1.14 0.002094
Target:  5'- gGGUAUACCCAGCUGGGUUCACCCACCu -3'
miRNA:   3'- -CCAUAUGGGUCGACCCAAGUGGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 23821 0.68 0.89392
Target:  5'- aGUAUAUCCauuuauggaaaucAGCUGGG-UCACuCUACUg -3'
miRNA:   3'- cCAUAUGGG-------------UCGACCCaAGUG-GGUGG- -5'
13279 3' -53.8 NC_003409.1 + 23912 0.67 0.919468
Target:  5'- uGGUAUuCCCAGCUGaGGUU-GCCUu-- -3'
miRNA:   3'- -CCAUAuGGGUCGAC-CCAAgUGGGugg -5'
13279 3' -53.8 NC_003409.1 + 24027 0.71 0.761087
Target:  5'- cGGUAgauggggGCCgGGaggaUGGGgcccCGCCCACCg -3'
miRNA:   3'- -CCAUa------UGGgUCg---ACCCaa--GUGGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 29377 0.67 0.930439
Target:  5'- uGGUGUGCggCAGCUGGGagCGCUCuuUCa -3'
miRNA:   3'- -CCAUAUGg-GUCGACCCaaGUGGGu-GG- -5'
13279 3' -53.8 NC_003409.1 + 32765 0.69 0.873443
Target:  5'- uGUuucaCCGGCUaGGGgUCACCCACg -3'
miRNA:   3'- cCAuaugGGUCGA-CCCaAGUGGGUGg -5'
13279 3' -53.8 NC_003409.1 + 33781 0.68 0.880722
Target:  5'- uGGUAU-CCCuGCUGGGacccaaauUUCAgcccggugcCCUACCg -3'
miRNA:   3'- -CCAUAuGGGuCGACCC--------AAGU---------GGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 34849 0.7 0.833829
Target:  5'- uGGUGUGCaCCGGCgUGGGaaaCGCCC-Cg -3'
miRNA:   3'- -CCAUAUG-GGUCG-ACCCaa-GUGGGuGg -5'
13279 3' -53.8 NC_003409.1 + 35418 0.68 0.907515
Target:  5'- aGGUAaccggGCCCAcCUGGc--CACCUACCg -3'
miRNA:   3'- -CCAUa----UGGGUcGACCcaaGUGGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 38495 0.71 0.751365
Target:  5'- uGUGUACCaacauagAGCUGGGcgaaaugaUCGCCCGCUu -3'
miRNA:   3'- cCAUAUGGg------UCGACCCa-------AGUGGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 46593 0.66 0.961167
Target:  5'- aGUAUucuGCCaggcuuGCUGGGgcC-CCCGCCa -3'
miRNA:   3'- cCAUA---UGGgu----CGACCCaaGuGGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 47367 0.68 0.880722
Target:  5'- gGGUAgcacugCUAGCUGGGUguugCuguCCCACUg -3'
miRNA:   3'- -CCAUaug---GGUCGACCCAa---Gu--GGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 49277 0.68 0.894591
Target:  5'- cGGUGgcccUGCCUAGUgGGGUggCGCgCCACa -3'
miRNA:   3'- -CCAU----AUGGGUCGaCCCAa-GUG-GGUGg -5'
13279 3' -53.8 NC_003409.1 + 56894 0.68 0.880722
Target:  5'- ----aACCCucugaAGUucuUGGGUUCAgCCACCa -3'
miRNA:   3'- ccauaUGGG-----UCG---ACCCAAGUgGGUGG- -5'
13279 3' -53.8 NC_003409.1 + 64862 0.7 0.816609
Target:  5'- ----aGCCCAGCccGGGUUCAUCC-UCa -3'
miRNA:   3'- ccauaUGGGUCGa-CCCAAGUGGGuGG- -5'
13279 3' -53.8 NC_003409.1 + 81279 0.69 0.873443
Target:  5'- aGGUGgGCUUAGUgGGGgaacUCugCCGCCu -3'
miRNA:   3'- -CCAUaUGGGUCGaCCCa---AGugGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.