miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13279 5' -50.1 NC_003409.1 + 11998 0.68 0.977205
Target:  5'- cCUGCUGGAggacgugggucagguUUACCCc-CUGGG-GUGCu -3'
miRNA:   3'- -GAUGACCU---------------AAUGGGucGACCCaUAUG- -5'
13279 5' -50.1 NC_003409.1 + 23613 0.72 0.866183
Target:  5'- ----aGGuaUACCCAGCUGGGUAa-- -3'
miRNA:   3'- gaugaCCuaAUGGGUCGACCCAUaug -5'
13279 5' -50.1 NC_003409.1 + 23649 0.85 0.262495
Target:  5'- -aGgUGGGUgaACCCAGCUGGGUAUACc -3'
miRNA:   3'- gaUgACCUAa-UGGGUCGACCCAUAUG- -5'
13279 5' -50.1 NC_003409.1 + 23777 1.1 0.007595
Target:  5'- cCUACUGGAUUACCCAGCUGGGUAUACc -3'
miRNA:   3'- -GAUGACCUAAUGGGUCGACCCAUAUG- -5'
13279 5' -50.1 NC_003409.1 + 23816 0.85 0.262495
Target:  5'- -aGCUGGGUaUACCCAGCUGGGUucACc -3'
miRNA:   3'- gaUGACCUA-AUGGGUCGACCCAuaUG- -5'
13279 5' -50.1 NC_003409.1 + 23915 0.69 0.94773
Target:  5'- -cGCUGGuAUU-CCCAGCUGaGGU-UGCc -3'
miRNA:   3'- gaUGACC-UAAuGGGUCGAC-CCAuAUG- -5'
13279 5' -50.1 NC_003409.1 + 27271 0.67 0.988442
Target:  5'- gCUGCUGGA--ACCCguagcagcAGCUauuaGGcGUGUACg -3'
miRNA:   3'- -GAUGACCUaaUGGG--------UCGA----CC-CAUAUG- -5'
13279 5' -50.1 NC_003409.1 + 51195 0.67 0.985077
Target:  5'- gUACUGGGggagGCCCAagGC-GGGUAcGCc -3'
miRNA:   3'- gAUGACCUaa--UGGGU--CGaCCCAUaUG- -5'
13279 5' -50.1 NC_003409.1 + 92251 0.66 0.994311
Target:  5'- uUAUUGGAaUACCCAGCauacuuuguUGGaaAUGCa -3'
miRNA:   3'- gAUGACCUaAUGGGUCG---------ACCcaUAUG- -5'
13279 5' -50.1 NC_003409.1 + 119064 0.69 0.94773
Target:  5'- -cGCUGGuAUU-CCCAGCUGaGGU-UGCc -3'
miRNA:   3'- gaUGACC-UAAuGGGUCGAC-CCAuAUG- -5'
13279 5' -50.1 NC_003409.1 + 119163 0.82 0.377459
Target:  5'- -aGCUGGAuUUACCCAGCcGGGUuUACg -3'
miRNA:   3'- gaUGACCU-AAUGGGUCGaCCCAuAUG- -5'
13279 5' -50.1 NC_003409.1 + 119233 0.94 0.071233
Target:  5'- -aGCUGGGUagACCCAGCUGGGUAUACc -3'
miRNA:   3'- gaUGACCUAa-UGGGUCGACCCAUAUG- -5'
13279 5' -50.1 NC_003409.1 + 119345 0.73 0.80431
Target:  5'- -aGCUGGGUauacgcagcugcgUaaACCCGGCUGGGUAa-- -3'
miRNA:   3'- gaUGACCUA-------------A--UGGGUCGACCCAUaug -5'
13279 5' -50.1 NC_003409.1 + 119387 0.74 0.776307
Target:  5'- -aGCUGGGUcUACCCAGCUGcGUAaACc -3'
miRNA:   3'- gaUGACCUA-AUGGGUCGACcCAUaUG- -5'
13279 5' -50.1 NC_003409.1 + 129078 0.68 0.973437
Target:  5'- ----cGGAggauCCUAGgUGGGUGUGCa -3'
miRNA:   3'- gaugaCCUaau-GGGUCgACCCAUAUG- -5'
13279 5' -50.1 NC_003409.1 + 130755 0.68 0.978693
Target:  5'- --cCUGG---GCCCAGCUGGGca-GCa -3'
miRNA:   3'- gauGACCuaaUGGGUCGACCCauaUG- -5'
13279 5' -50.1 NC_003409.1 + 130925 0.68 0.970482
Target:  5'- uUGCgggGGAcggugcUGCCCAGCUGGGc---- -3'
miRNA:   3'- gAUGa--CCUa-----AUGGGUCGACCCauaug -5'
13279 5' -50.1 NC_003409.1 + 131100 0.67 0.985077
Target:  5'- gCUGCUGGug-GCCC---UGGGUGUAg -3'
miRNA:   3'- -GAUGACCuaaUGGGucgACCCAUAUg -5'
13279 5' -50.1 NC_003409.1 + 131508 0.66 0.991186
Target:  5'- ----cGGGgccaacggUGCCCAG-UGGGUGUGCc -3'
miRNA:   3'- gaugaCCUa-------AUGGGUCgACCCAUAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.