Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13280 | 3' | -58 | NC_003409.1 | + | 24774 | 0.69 | 0.62309 |
Target: 5'- cGCCACCCuccccGGAGG-GGGAUcCCGGcgcGCCa -3' miRNA: 3'- -UGGUGGG-----UCUCCgCUCUAaGGUC---CGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 109834 | 0.66 | 0.787568 |
Target: 5'- cGCCGCCCaagacgccgcggcgGGAGGCGGuGGcgCCcGGCg -3' miRNA: 3'- -UGGUGGG--------------UCUCCGCU-CUaaGGuCCGg -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 23191 | 0.66 | 0.825344 |
Target: 5'- -gCGCCCGGGuGCacGGGGUcaccUCCAGGUCa -3' miRNA: 3'- ugGUGGGUCUcCG--CUCUA----AGGUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 118794 | 1.05 | 0.003078 |
Target: 5'- aACCACCCAGAGGCGAGAUUCCAgGGCCg -3' miRNA: 3'- -UGGUGGGUCUCCGCUCUAAGGU-CCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 68679 | 0.74 | 0.370064 |
Target: 5'- gGCCACCaagAGAGGCcagcgGAGAUggaugCUGGGCCg -3' miRNA: 3'- -UGGUGGg--UCUCCG-----CUCUAa----GGUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 12590 | 0.73 | 0.420522 |
Target: 5'- cACCaACCCAGAGGCGG--UUCCgauggGGGCa -3' miRNA: 3'- -UGG-UGGGUCUCCGCUcuAAGG-----UCCGg -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 118745 | 0.71 | 0.522801 |
Target: 5'- gGCCGCgCCAGAGGUGAGGUggacCUAGcaucCCg -3' miRNA: 3'- -UGGUG-GGUCUCCGCUCUAa---GGUCc---GG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 24594 | 0.69 | 0.62309 |
Target: 5'- cGCCACCCuccccGGAGG-GGGAUcCCGGcgcGCCa -3' miRNA: 3'- -UGGUGGG-----UCUCCgCUCUAaGGUC---CGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 24654 | 0.69 | 0.62309 |
Target: 5'- cGCCACCCuccccGGAGG-GGGAUcCCGGcgcGCCa -3' miRNA: 3'- -UGGUGGG-----UCUCCgCUCUAaGGUC---CGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 107778 | 0.67 | 0.77189 |
Target: 5'- cACgCGCCCAGuccGGCGAuuUgcagCAGGCCa -3' miRNA: 3'- -UG-GUGGGUCu--CCGCUcuAag--GUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 111827 | 0.68 | 0.704062 |
Target: 5'- uUUugCCAGAGGgGGGuUUCCucgcgucGGCCa -3' miRNA: 3'- uGGugGGUCUCCgCUCuAAGGu------CCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 43983 | 0.68 | 0.694059 |
Target: 5'- cUCAgUCAGGGGCGuAGAaUCCccGGCCa -3' miRNA: 3'- uGGUgGGUCUCCGC-UCUaAGGu-CCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 24834 | 0.69 | 0.62309 |
Target: 5'- cGCCACCCuccccGGAGG-GGGAUcCCGGcgcGCCa -3' miRNA: 3'- -UGGUGGG-----UCUCCgCUCUAaGGUC---CGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 108619 | 0.68 | 0.714004 |
Target: 5'- gGCCACCaUAGAcacGGUGGccggCCAGGCCc -3' miRNA: 3'- -UGGUGG-GUCU---CCGCUcuaaGGUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 116423 | 0.69 | 0.633272 |
Target: 5'- cCCGCCCGGGGcGCGAagcgCCAGcGUCa -3' miRNA: 3'- uGGUGGGUCUC-CGCUcuaaGGUC-CGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 105879 | 0.69 | 0.643452 |
Target: 5'- gAUCGCCUcgcgugAGAGG-GAGAcgUCCAuGGCCg -3' miRNA: 3'- -UGGUGGG------UCUCCgCUCUa-AGGU-CCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 121361 | 0.67 | 0.761553 |
Target: 5'- uACUGCCCGGuuccaccAGGCG-GcgUUguGGCCa -3' miRNA: 3'- -UGGUGGGUC-------UCCGCuCuaAGguCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 87939 | 0.66 | 0.811629 |
Target: 5'- cGCCguGCCCGGuAGGCcugcaccagaugaguGAGggUCUgaaGGGCCg -3' miRNA: 3'- -UGG--UGGGUC-UCCG---------------CUCuaAGG---UCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 110424 | 0.69 | 0.637344 |
Target: 5'- uGCCGCCUaccgacaucgccagaAGAGGCGGGAU-CaCAGuucGCCa -3' miRNA: 3'- -UGGUGGG---------------UCUCCGCUCUAaG-GUC---CGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 41534 | 0.69 | 0.643452 |
Target: 5'- aGCUGCCCAGAGucCGcGcgUCCGuGGCCg -3' miRNA: 3'- -UGGUGGGUCUCc-GCuCuaAGGU-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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