miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13280 3' -58 NC_003409.1 + 128529 0.69 0.643452
Target:  5'- uGCCGugUCCAGuaGGGgGAGAUgucacuUCCAGGCa -3'
miRNA:   3'- -UGGU--GGGUC--UCCgCUCUA------AGGUCCGg -5'
13280 3' -58 NC_003409.1 + 110424 0.69 0.637344
Target:  5'- uGCCGCCUaccgacaucgccagaAGAGGCGGGAU-CaCAGuucGCCa -3'
miRNA:   3'- -UGGUGGG---------------UCUCCGCUCUAaG-GUC---CGG- -5'
13280 3' -58 NC_003409.1 + 116423 0.69 0.633272
Target:  5'- cCCGCCCGGGGcGCGAagcgCCAGcGUCa -3'
miRNA:   3'- uGGUGGGUCUC-CGCUcuaaGGUC-CGG- -5'
13280 3' -58 NC_003409.1 + 24834 0.69 0.62309
Target:  5'- cGCCACCCuccccGGAGG-GGGAUcCCGGcgcGCCa -3'
miRNA:   3'- -UGGUGGG-----UCUCCgCUCUAaGGUC---CGG- -5'
13280 3' -58 NC_003409.1 + 24594 0.69 0.62309
Target:  5'- cGCCACCCuccccGGAGG-GGGAUcCCGGcgcGCCa -3'
miRNA:   3'- -UGGUGGG-----UCUCCgCUCUAaGGUC---CGG- -5'
13280 3' -58 NC_003409.1 + 24654 0.69 0.62309
Target:  5'- cGCCACCCuccccGGAGG-GGGAUcCCGGcgcGCCa -3'
miRNA:   3'- -UGGUGGG-----UCUCCgCUCUAaGGUC---CGG- -5'
13280 3' -58 NC_003409.1 + 24714 0.69 0.62309
Target:  5'- cGCCACCCuccccGGAGG-GGGAUcCCGGcgcGCCa -3'
miRNA:   3'- -UGGUGGG-----UCUCCgCUCUAaGGUC---CGG- -5'
13280 3' -58 NC_003409.1 + 24774 0.69 0.62309
Target:  5'- cGCCACCCuccccGGAGG-GGGAUcCCGGcgcGCCa -3'
miRNA:   3'- -UGGUGGG-----UCUCCgCUCUAaGGUC---CGG- -5'
13280 3' -58 NC_003409.1 + 52337 0.71 0.542479
Target:  5'- cACUaaGCCCGGuGGCGGGGgcaCGGGCUc -3'
miRNA:   3'- -UGG--UGGGUCuCCGCUCUaagGUCCGG- -5'
13280 3' -58 NC_003409.1 + 118745 0.71 0.522801
Target:  5'- gGCCGCgCCAGAGGUGAGGUggacCUAGcaucCCg -3'
miRNA:   3'- -UGGUG-GGUCUCCGCUCUAa---GGUCc---GG- -5'
13280 3' -58 NC_003409.1 + 12590 0.73 0.420522
Target:  5'- cACCaACCCAGAGGCGG--UUCCgauggGGGCa -3'
miRNA:   3'- -UGG-UGGGUCUCCGCUcuAAGG-----UCCGg -5'
13280 3' -58 NC_003409.1 + 63974 0.73 0.420522
Target:  5'- gACCACUCAGGGGCucAGGcgCCAGGUg -3'
miRNA:   3'- -UGGUGGGUCUCCGc-UCUaaGGUCCGg -5'
13280 3' -58 NC_003409.1 + 34906 0.74 0.378181
Target:  5'- aACCGaagauggaCAGAGGCGGGAagaUUCUGGGCCc -3'
miRNA:   3'- -UGGUgg------GUCUCCGCUCU---AAGGUCCGG- -5'
13280 3' -58 NC_003409.1 + 68679 0.74 0.370064
Target:  5'- gGCCACCaagAGAGGCcagcgGAGAUggaugCUGGGCCg -3'
miRNA:   3'- -UGGUGGg--UCUCCG-----CUCUAa----GGUCCGG- -5'
13280 3' -58 NC_003409.1 + 82439 0.82 0.118235
Target:  5'- uGCgGCCCAGgggGGGUGGGAUUCCcuGGGCCg -3'
miRNA:   3'- -UGgUGGGUC---UCCGCUCUAAGG--UCCGG- -5'
13280 3' -58 NC_003409.1 + 118794 1.05 0.003078
Target:  5'- aACCACCCAGAGGCGAGAUUCCAgGGCCg -3'
miRNA:   3'- -UGGUGGGUCUCCGCUCUAAGGU-CCGG- -5'
13280 3' -58 NC_003409.1 + 24162 1.1 0.001381
Target:  5'- aACCACCCAGAGGCGAGAUUCCAGGCCc -3'
miRNA:   3'- -UGGUGGGUCUCCGCUCUAAGGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.