miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13280 5' -63.5 NC_003409.1 + 114552 0.66 0.539736
Target:  5'- -cAGCCCCaCCCCgCUGUCGCCa----- -3'
miRNA:   3'- gaUCGGGG-GGGG-GGCGGUGGcuuguu -5'
13280 5' -63.5 NC_003409.1 + 60304 0.66 0.520626
Target:  5'- uUGGCUCUCCCgCCgcagCGCCGCCuGGCGAa -3'
miRNA:   3'- gAUCGGGGGGG-GG----GCGGUGGcUUGUU- -5'
13280 5' -63.5 NC_003409.1 + 24051 0.66 0.520626
Target:  5'- -gGGCCCCgCCCaCCGCUggcgcGCCccaGAACAu -3'
miRNA:   3'- gaUCGGGGgGGG-GGCGG-----UGG---CUUGUu -5'
13280 5' -63.5 NC_003409.1 + 115579 0.66 0.520626
Target:  5'- gUGGCCUCCUCCuuGUCugucCUGGGCAGg -3'
miRNA:   3'- gAUCGGGGGGGGggCGGu---GGCUUGUU- -5'
13280 5' -63.5 NC_003409.1 + 68867 0.66 0.501787
Target:  5'- -cGGCCCUCCCCUUcuCCACCGu-CAAa -3'
miRNA:   3'- gaUCGGGGGGGGGGc-GGUGGCuuGUU- -5'
13280 5' -63.5 NC_003409.1 + 92191 0.66 0.49248
Target:  5'- -aGGCCCCUguCCCaCCGCCACgaGAuccaACAAg -3'
miRNA:   3'- gaUCGGGGG--GGG-GGCGGUGg-CU----UGUU- -5'
13280 5' -63.5 NC_003409.1 + 47961 0.67 0.47411
Target:  5'- ---aCCCCCCCCCCGCUucaaAUCGuuAGCGu -3'
miRNA:   3'- gaucGGGGGGGGGGCGG----UGGC--UUGUu -5'
13280 5' -63.5 NC_003409.1 + 119032 0.68 0.429771
Target:  5'- -gGGCCCCgCCCaCCGCCACUc----- -3'
miRNA:   3'- gaUCGGGGgGGG-GGCGGUGGcuuguu -5'
13280 5' -63.5 NC_003409.1 + 25744 0.68 0.404366
Target:  5'- ---cCCCCCCCCCCGgCACacguaGGGCu- -3'
miRNA:   3'- gaucGGGGGGGGGGCgGUGg----CUUGuu -5'
13280 5' -63.5 NC_003409.1 + 118829 0.69 0.348922
Target:  5'- aCUAGCUCCCCUCCC---AUCGAACAAc -3'
miRNA:   3'- -GAUCGGGGGGGGGGcggUGGCUUGUU- -5'
13280 5' -63.5 NC_003409.1 + 113081 0.7 0.312762
Target:  5'- -aAGUCCCgCCacguagugcugCCCGCCugCGAGCAGg -3'
miRNA:   3'- gaUCGGGGgGG-----------GGGCGGugGCUUGUU- -5'
13280 5' -63.5 NC_003409.1 + 24194 0.7 0.305881
Target:  5'- -cAGCCCCCCCUCgCGCaCugCGcGCGc -3'
miRNA:   3'- gaUCGGGGGGGGG-GCG-GugGCuUGUu -5'
13280 5' -63.5 NC_003409.1 + 66608 0.7 0.299115
Target:  5'- uCUGuGUCCCCCUCCUGCC-CCaGAACGu -3'
miRNA:   3'- -GAU-CGGGGGGGGGGCGGuGG-CUUGUu -5'
13280 5' -63.5 NC_003409.1 + 52003 0.7 0.292467
Target:  5'- -aGGCCaCCCCCCgUGCgACUGAGCu- -3'
miRNA:   3'- gaUCGG-GGGGGGgGCGgUGGCUUGuu -5'
13280 5' -63.5 NC_003409.1 + 10188 0.72 0.232261
Target:  5'- --uGUCCguggaCCCCCCGCCGCCGGcaGCAGc -3'
miRNA:   3'- gauCGGGg----GGGGGGCGGUGGCU--UGUU- -5'
13280 5' -63.5 NC_003409.1 + 74201 0.72 0.221025
Target:  5'- ---aCCCCCgcuacugucguuaCCCCCGCCACUGGACGu -3'
miRNA:   3'- gaucGGGGG-------------GGGGGCGGUGGCUUGUu -5'
13280 5' -63.5 NC_003409.1 + 88849 0.73 0.187328
Target:  5'- -cAGCCCCCgcgCCCCUGCCuGCCGGcaGCGAu -3'
miRNA:   3'- gaUCGGGGG---GGGGGCGG-UGGCU--UGUU- -5'
13280 5' -63.5 NC_003409.1 + 42858 0.76 0.122997
Target:  5'- -gGGCCCCCUacuaCUGCCACCGAGCGc -3'
miRNA:   3'- gaUCGGGGGGgg--GGCGGUGGCUUGUu -5'
13280 5' -63.5 NC_003409.1 + 52171 0.79 0.075672
Target:  5'- -gAGCCCgUgCCCCCGCCACCGGGCu- -3'
miRNA:   3'- gaUCGGG-GgGGGGGCGGUGGCUUGuu -5'
13280 5' -63.5 NC_003409.1 + 24127 1.05 0.000877
Target:  5'- aCUAGCCCCCCCCCCGCCACCGAACAAc -3'
miRNA:   3'- -GAUCGGGGGGGGGGCGGUGGCUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.