miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13281 3' -52.3 NC_003409.1 + 113396 0.67 0.963123
Target:  5'- uGUuuGGCGAcgGUGUCugaGCCAGcGCGCa -3'
miRNA:   3'- cCAccCCGUUuaCACAG---UGGUU-CGCG- -5'
13281 3' -52.3 NC_003409.1 + 114405 0.67 0.965845
Target:  5'- gGGUGGGGCuggcaagGcCcCCAaAGCGCg -3'
miRNA:   3'- -CCACCCCGuuuaca-CaGuGGU-UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 82506 0.67 0.966502
Target:  5'- --cGGGGCGGAcaGUGUCGCgcugcaccgaagCGAGCGa -3'
miRNA:   3'- ccaCCCCGUUUa-CACAGUG------------GUUCGCg -5'
13281 3' -52.3 NC_003409.1 + 131268 0.67 0.966828
Target:  5'- aGGUGGGGCAcgaaaa----CAGGCGCa -3'
miRNA:   3'- -CCACCCCGUuuacacagugGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 82863 0.67 0.965513
Target:  5'- uGGUGGGGCGggAAUGaagacauugaaacaUG-CGCCAugguGGCGg -3'
miRNA:   3'- -CCACCCCGU--UUAC--------------ACaGUGGU----UCGCg -5'
13281 3' -52.3 NC_003409.1 + 87162 0.67 0.955668
Target:  5'- -cUGGGGUggGUG-GUgCGCCGgcggagGGCGUg -3'
miRNA:   3'- ccACCCCGuuUACaCA-GUGGU------UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 12020 0.68 0.925767
Target:  5'- uGUGGGuGCGAgguguuugaguccaAUGUGgaCGCCAuuaGGCGCu -3'
miRNA:   3'- cCACCC-CGUU--------------UACACa-GUGGU---UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 84580 0.68 0.94725
Target:  5'- --cGGGGCA---GUGcUUGCCAGGCGa -3'
miRNA:   3'- ccaCCCCGUuuaCAC-AGUGGUUCGCg -5'
13281 3' -52.3 NC_003409.1 + 22421 0.68 0.94267
Target:  5'- --cGGGGCGGAaaguaUGcggGUCGCCugcgaagcGGCGCa -3'
miRNA:   3'- ccaCCCCGUUU-----ACa--CAGUGGu-------UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 46175 0.69 0.896928
Target:  5'- uGGgccGGGGCGaugacuGAUGaGUaGCCAAGUGCg -3'
miRNA:   3'- -CCa--CCCCGU------UUACaCAgUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 131372 0.69 0.909879
Target:  5'- aGUGGGuGCAGGggagGcGUCACCAGGUu- -3'
miRNA:   3'- cCACCC-CGUUUa---CaCAGUGGUUCGcg -5'
13281 3' -52.3 NC_003409.1 + 8943 0.69 0.890778
Target:  5'- gGGUGuGGGgGAAcuggacgucugaaagGUGUCACCccucGAGUGCg -3'
miRNA:   3'- -CCAC-CCCgUUUa--------------CACAGUGG----UUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 71558 0.69 0.909879
Target:  5'- gGGcGGGGCuuAAUGaGUCGCCGGuaGCu -3'
miRNA:   3'- -CCaCCCCGu-UUACaCAGUGGUUcgCG- -5'
13281 3' -52.3 NC_003409.1 + 126868 0.69 0.909879
Target:  5'- cGGUGGaGGUAAagGUGUUGCgGgAGCGg -3'
miRNA:   3'- -CCACC-CCGUUuaCACAGUGgU-UCGCg -5'
13281 3' -52.3 NC_003409.1 + 110033 0.69 0.903528
Target:  5'- --aGGGGUAcg-GUGgcaguguugCGCCGGGCGCc -3'
miRNA:   3'- ccaCCCCGUuuaCACa--------GUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 77420 0.69 0.890083
Target:  5'- -cUGGGGUAgugacuGAUGUGggACCGGGCGa -3'
miRNA:   3'- ccACCCCGU------UUACACagUGGUUCGCg -5'
13281 3' -52.3 NC_003409.1 + 69845 0.7 0.849893
Target:  5'- -aUGGGGCAAAuccggguucacccuUGUGUUGCCugguucGGUGCu -3'
miRNA:   3'- ccACCCCGUUU--------------ACACAGUGGu-----UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 45933 0.7 0.852335
Target:  5'- --gGGGGCAGAUaguuuuugGUGcaugcUCACCAuGGCGCu -3'
miRNA:   3'- ccaCCCCGUUUA--------CAC-----AGUGGU-UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 100068 0.7 0.857958
Target:  5'- uGGcGGGGCGGcUGUGgCACCAaauuauggaggcuaGGUGCc -3'
miRNA:   3'- -CCaCCCCGUUuACACaGUGGU--------------UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 133861 0.71 0.844122
Target:  5'- aGGUGGGugugguucuaGCAGGgucUGUGUgauuuuggaCACCAGGUGCc -3'
miRNA:   3'- -CCACCC----------CGUUU---ACACA---------GUGGUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.