miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13281 5' -51.8 NC_003409.1 + 75431 0.66 0.975355
Target:  5'- -cACCCCU--UGUCAguucuUCCCCAUa -3'
miRNA:   3'- aaUGGGGGuaACAGUaaau-GGGGGUA- -5'
13281 5' -51.8 NC_003409.1 + 46306 0.66 0.975354
Target:  5'- -gACCCCCAg---CA---ACCCCCGg -3'
miRNA:   3'- aaUGGGGGUaacaGUaaaUGGGGGUa -5'
13281 5' -51.8 NC_003409.1 + 118891 0.66 0.975354
Target:  5'- -gGCCCCUAUaaUCcug-GCCCCCAUc -3'
miRNA:   3'- aaUGGGGGUAacAGuaaaUGGGGGUA- -5'
13281 5' -51.8 NC_003409.1 + 78009 0.66 0.975354
Target:  5'- cUACCUCCGUUGagggacguaUCAUUcuuaACCCCCc- -3'
miRNA:   3'- aAUGGGGGUAAC---------AGUAAa---UGGGGGua -5'
13281 5' -51.8 NC_003409.1 + 25769 0.66 0.962762
Target:  5'- --uCCCgCAcgGUCGUUcggGCCCCCGUc -3'
miRNA:   3'- aauGGGgGUaaCAGUAAa--UGGGGGUA- -5'
13281 5' -51.8 NC_003409.1 + 4867 0.66 0.959018
Target:  5'- -aACCCUCAUUGUgGac-AUCCCCAg -3'
miRNA:   3'- aaUGGGGGUAACAgUaaaUGGGGGUa -5'
13281 5' -51.8 NC_003409.1 + 110772 0.66 0.959018
Target:  5'- cUACCCCCGcacugcccGUUAUaucACCCCCAg -3'
miRNA:   3'- aAUGGGGGUaa------CAGUAaa-UGGGGGUa -5'
13281 5' -51.8 NC_003409.1 + 25430 0.67 0.950775
Target:  5'- -cACCCUCAuUUGUCGUUgcacccauCCCCCc- -3'
miRNA:   3'- aaUGGGGGU-AACAGUAAau------GGGGGua -5'
13281 5' -51.8 NC_003409.1 + 18963 0.67 0.9481
Target:  5'- cUGCCCCCGcgGggcCAUUuuggucgccuggagcUGCCCCCGc -3'
miRNA:   3'- aAUGGGGGUaaCa--GUAA---------------AUGGGGGUa -5'
13281 5' -51.8 NC_003409.1 + 9329 0.71 0.811347
Target:  5'- ---aCCCCGUUGaCAUUUACCUUCAUg -3'
miRNA:   3'- aaugGGGGUAACaGUAAAUGGGGGUA- -5'
13281 5' -51.8 NC_003409.1 + 111966 0.71 0.792403
Target:  5'- -gACCCCCAgugaGUCcug-GCCCCCGg -3'
miRNA:   3'- aaUGGGGGUaa--CAGuaaaUGGGGGUa -5'
13281 5' -51.8 NC_003409.1 + 74200 0.75 0.570612
Target:  5'- -aACCCCCGcuacUGUCG-UUACCCCCGc -3'
miRNA:   3'- aaUGGGGGUa---ACAGUaAAUGGGGGUa -5'
13281 5' -51.8 NC_003409.1 + 30068 1.03 0.011937
Target:  5'- uUUACCCCCAUUGUCAUUUACCCCCAUc -3'
miRNA:   3'- -AAUGGGGGUAACAGUAAAUGGGGGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.