miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13282 5' -54.3 NC_003409.1 + 97288 0.66 0.930196
Target:  5'- aCUCCAGCuucuCGCaaAGGGCgggGUCCAAa-- -3'
miRNA:   3'- gGAGGUCGu---GCG--UCUCG---UAGGUUguu -5'
13282 5' -54.3 NC_003409.1 + 119829 0.66 0.930196
Target:  5'- cUCUCuCAGuCGCGCcuAGCugcuUCCAACAGa -3'
miRNA:   3'- -GGAG-GUC-GUGCGucUCGu---AGGUUGUU- -5'
13282 5' -54.3 NC_003409.1 + 99473 0.66 0.930196
Target:  5'- aCUCCAGCugaGCGCAGuauuGGCGUggCgCAGCAc -3'
miRNA:   3'- gGAGGUCG---UGCGUC----UCGUA--G-GUUGUu -5'
13282 5' -54.3 NC_003409.1 + 78805 0.66 0.926391
Target:  5'- gCCUCCGGCugGCGcguaacggcaggcguGAgagGCAaacagaaguggguUCCGACAAg -3'
miRNA:   3'- -GGAGGUCGugCGU---------------CU---CGU-------------AGGUUGUU- -5'
13282 5' -54.3 NC_003409.1 + 11863 0.66 0.924722
Target:  5'- cCCUCCAgGCugGCuucGGucgcGCAUCCuGCGg -3'
miRNA:   3'- -GGAGGU-CGugCG---UCu---CGUAGGuUGUu -5'
13282 5' -54.3 NC_003409.1 + 41769 0.66 0.918406
Target:  5'- -aUCCGGUACGCGccgaaagaccggcGAGCAgCCAugAAa -3'
miRNA:   3'- ggAGGUCGUGCGU-------------CUCGUaGGUugUU- -5'
13282 5' -54.3 NC_003409.1 + 130639 0.67 0.900282
Target:  5'- -gUCUGGCugGCAGGGUcucAUCCGcgGCAu -3'
miRNA:   3'- ggAGGUCGugCGUCUCG---UAGGU--UGUu -5'
13282 5' -54.3 NC_003409.1 + 57776 0.67 0.879341
Target:  5'- aUUCCGuCuCGCAGGGCGUCCcACAc -3'
miRNA:   3'- gGAGGUcGuGCGUCUCGUAGGuUGUu -5'
13282 5' -54.3 NC_003409.1 + 112904 0.67 0.879341
Target:  5'- cCCUCCuGCuCGCAG-GCGggCAGCAc -3'
miRNA:   3'- -GGAGGuCGuGCGUCuCGUagGUUGUu -5'
13282 5' -54.3 NC_003409.1 + 41958 0.67 0.879341
Target:  5'- uUCUUCAGCACGguGGGCAgucgcUCUAcguugugaGCGAu -3'
miRNA:   3'- -GGAGGUCGUGCguCUCGU-----AGGU--------UGUU- -5'
13282 5' -54.3 NC_003409.1 + 82235 0.67 0.864197
Target:  5'- gCCUCCGGCagACG-AGcGCAUCCGugGu -3'
miRNA:   3'- -GGAGGUCG--UGCgUCuCGUAGGUugUu -5'
13282 5' -54.3 NC_003409.1 + 130223 0.67 0.864196
Target:  5'- -aUCCAGCGucgccuuaGCAGAGUGUCCAGUAGa -3'
miRNA:   3'- ggAGGUCGUg-------CGUCUCGUAGGUUGUU- -5'
13282 5' -54.3 NC_003409.1 + 64327 0.68 0.831282
Target:  5'- aUCUCCugAGuCACGCugguGAGUAUCCGGCc- -3'
miRNA:   3'- -GGAGG--UC-GUGCGu---CUCGUAGGUUGuu -5'
13282 5' -54.3 NC_003409.1 + 51066 0.68 0.831282
Target:  5'- cUCUCCGGCguAUGCAGGagaacGCAUUCGGCGc -3'
miRNA:   3'- -GGAGGUCG--UGCGUCU-----CGUAGGUUGUu -5'
13282 5' -54.3 NC_003409.1 + 117691 0.68 0.831282
Target:  5'- --aCCAGCGCGaCGGAaguugGCcUCCAGCAAa -3'
miRNA:   3'- ggaGGUCGUGC-GUCU-----CGuAGGUUGUU- -5'
13282 5' -54.3 NC_003409.1 + 61054 0.69 0.776291
Target:  5'- --gCgGGCGCGUGGGGCA-CCAGCAGa -3'
miRNA:   3'- ggaGgUCGUGCGUCUCGUaGGUUGUU- -5'
13282 5' -54.3 NC_003409.1 + 107033 0.69 0.776291
Target:  5'- uUUCCAGgGCGUccAGGGCAUCUcGCAGc -3'
miRNA:   3'- gGAGGUCgUGCG--UCUCGUAGGuUGUU- -5'
13282 5' -54.3 NC_003409.1 + 37255 0.69 0.776291
Target:  5'- aUCgCCAGCAUGCaAGGGCcgCCAAgAAg -3'
miRNA:   3'- -GGaGGUCGUGCG-UCUCGuaGGUUgUU- -5'
13282 5' -54.3 NC_003409.1 + 63455 0.7 0.756755
Target:  5'- uCCUCCAGCuuGCAGGaCAUCgCGGCc- -3'
miRNA:   3'- -GGAGGUCGugCGUCUcGUAG-GUUGuu -5'
13282 5' -54.3 NC_003409.1 + 4164 0.7 0.730667
Target:  5'- gCCUUCgugcacuagaaguuuGGCACGCAGAGCAggCCuuGCAu -3'
miRNA:   3'- -GGAGG---------------UCGUGCGUCUCGUa-GGu-UGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.