miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13283 5' -56.5 NC_003409.1 + 6397 0.66 0.88688
Target:  5'- cGgGGGUGCCAUggACGGccgaggguguggccUCGGUcaUCCAGg -3'
miRNA:   3'- -CgUCCGCGGUG--UGCC--------------AGUCA--AGGUCg -5'
13283 5' -56.5 NC_003409.1 + 120215 0.66 0.882014
Target:  5'- cCAGGCGgcuggCACACGGgccgugAGcgCCAGCa -3'
miRNA:   3'- cGUCCGCg----GUGUGCCag----UCaaGGUCG- -5'
13283 5' -56.5 NC_003409.1 + 39697 0.66 0.882014
Target:  5'- aCAGGUGUUguaGC-CGGuUCAGUUUUAGCu -3'
miRNA:   3'- cGUCCGCGG---UGuGCC-AGUCAAGGUCG- -5'
13283 5' -56.5 NC_003409.1 + 95553 0.66 0.882014
Target:  5'- aGUuGGCGCCGCugGGgggCAG--CUGGUg -3'
miRNA:   3'- -CGuCCGCGGUGugCCa--GUCaaGGUCG- -5'
13283 5' -56.5 NC_003409.1 + 80282 0.66 0.867518
Target:  5'- --uGGCGCCcuACACGGggAGUuucgugaccacgUCCAGUc -3'
miRNA:   3'- cguCCGCGG--UGUGCCagUCA------------AGGUCG- -5'
13283 5' -56.5 NC_003409.1 + 42600 0.66 0.867518
Target:  5'- uGCAGGUGCgAguUGGUggcCAGacagcagaauauUUCCAGCu -3'
miRNA:   3'- -CGUCCGCGgUguGCCA---GUC------------AAGGUCG- -5'
13283 5' -56.5 NC_003409.1 + 80483 0.66 0.867518
Target:  5'- aCAGGUGCCGCACcugaGGUUgcaaaacgAGUUCgCuGGCa -3'
miRNA:   3'- cGUCCGCGGUGUG----CCAG--------UCAAG-G-UCG- -5'
13283 5' -56.5 NC_003409.1 + 90150 0.66 0.867518
Target:  5'- gGCcGGCGUCugGacgcCGGcggCAG-UCCAGCa -3'
miRNA:   3'- -CGuCCGCGGugU----GCCa--GUCaAGGUCG- -5'
13283 5' -56.5 NC_003409.1 + 103638 0.66 0.859948
Target:  5'- aGgGGGCGgCugGCgGGUCGGgugUCCugacGCa -3'
miRNA:   3'- -CgUCCGCgGugUG-CCAGUCa--AGGu---CG- -5'
13283 5' -56.5 NC_003409.1 + 8097 0.66 0.852171
Target:  5'- gGCAGGa-CCugACGGUCGacugUCCAacGCg -3'
miRNA:   3'- -CGUCCgcGGugUGCCAGUca--AGGU--CG- -5'
13283 5' -56.5 NC_003409.1 + 16790 0.67 0.836025
Target:  5'- --uGGCgGCCGCGCGGgg----CCAGCg -3'
miRNA:   3'- cguCCG-CGGUGUGCCagucaaGGUCG- -5'
13283 5' -56.5 NC_003409.1 + 36914 0.67 0.819135
Target:  5'- cCAGGCGCaCGCuGCGGaagCAGauUUCCGGa -3'
miRNA:   3'- cGUCCGCG-GUG-UGCCa--GUC--AAGGUCg -5'
13283 5' -56.5 NC_003409.1 + 56061 0.67 0.81043
Target:  5'- -uGGGCGuCCACAUGG-CAGcugaaUCAGCa -3'
miRNA:   3'- cgUCCGC-GGUGUGCCaGUCaa---GGUCG- -5'
13283 5' -56.5 NC_003409.1 + 32111 0.67 0.81043
Target:  5'- -gGGGCGCCgACGCGGcaCAGUggCCGuGUa -3'
miRNA:   3'- cgUCCGCGG-UGUGCCa-GUCAa-GGU-CG- -5'
13283 5' -56.5 NC_003409.1 + 82625 0.68 0.783374
Target:  5'- uGUAGGCGUCGCGUGGUCuGcgCCGa- -3'
miRNA:   3'- -CGUCCGCGGUGUGCCAGuCaaGGUcg -5'
13283 5' -56.5 NC_003409.1 + 16633 0.68 0.764641
Target:  5'- cGCuGGCcCCGCGCGGccgcCAGguagUCUGGCa -3'
miRNA:   3'- -CGuCCGcGGUGUGCCa---GUCa---AGGUCG- -5'
13283 5' -56.5 NC_003409.1 + 19153 0.68 0.755093
Target:  5'- aGgAGGgGCC-CGCGGgggCAGcUCCAGg -3'
miRNA:   3'- -CgUCCgCGGuGUGCCa--GUCaAGGUCg -5'
13283 5' -56.5 NC_003409.1 + 8750 0.68 0.755093
Target:  5'- cGCAGGCGCgGCGCacucgaGGggugacaccuuUCAGacgUCCAGUu -3'
miRNA:   3'- -CGUCCGCGgUGUG------CC-----------AGUCa--AGGUCG- -5'
13283 5' -56.5 NC_003409.1 + 120386 0.69 0.745436
Target:  5'- uGCuGGCGCU-CACGGcCcGUgugCCAGCc -3'
miRNA:   3'- -CGuCCGCGGuGUGCCaGuCAa--GGUCG- -5'
13283 5' -56.5 NC_003409.1 + 74626 0.69 0.725831
Target:  5'- aGCGGGCGUCGCcgaGGUCgcccugaccGGUUgCAGUu -3'
miRNA:   3'- -CGUCCGCGGUGug-CCAG---------UCAAgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.