Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 83864 | 0.7 | 0.356784 |
Target: 5'- cGCGGggacGGgGCGUGGGGCUcuaacuugccaACCGCCa -3' miRNA: 3'- -UGCCaa--CCgUGCGUCCCGG-----------UGGCGGc -5' |
|||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 92122 | 0.7 | 0.356784 |
Target: 5'- -gGGUcccGGUACGCGucccuguuucuGGGCCGCCgGCCGu -3' miRNA: 3'- ugCCAa--CCGUGCGU-----------CCCGGUGG-CGGC- -5' |
|||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 107028 | 0.71 | 0.320141 |
Target: 5'- -aGGgaccagGGCGCGgAcaaguGGGCCACUGCCGu -3' miRNA: 3'- ugCCaa----CCGUGCgU-----CCCGGUGGCGGC- -5' |
|||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 126393 | 0.71 | 0.306294 |
Target: 5'- gGCGGUUGGCgugGCGgAGuaucGCCAUCGCUGg -3' miRNA: 3'- -UGCCAACCG---UGCgUCc---CGGUGGCGGC- -5' |
|||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 24744 | 0.72 | 0.286393 |
Target: 5'- cCGGggagggGGCGCGcCGGGGCUccugggguGCUGCCGg -3' miRNA: 3'- uGCCaa----CCGUGC-GUCCCGG--------UGGCGGC- -5' |
|||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 110028 | 0.74 | 0.206858 |
Target: 5'- uACGG-UGGCaguguuGCGcCGGGcGCCACCGCCu -3' miRNA: 3'- -UGCCaACCG------UGC-GUCC-CGGUGGCGGc -5' |
|||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 104842 | 0.74 | 0.197194 |
Target: 5'- gACGGgacgUGGCggaaaugaaggACGCGGuGGCCACCaGCCa -3' miRNA: 3'- -UGCCa---ACCG-----------UGCGUC-CCGGUGG-CGGc -5' |
|||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 49097 | 0.75 | 0.182996 |
Target: 5'- gGCGGcucgacugUGGCGCGCcaccccacuaggcAGGGCCACCGUgGc -3' miRNA: 3'- -UGCCa-------ACCGUGCG-------------UCCCGGUGGCGgC- -5' |
|||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 109539 | 0.76 | 0.147153 |
Target: 5'- -aGGUcaGGuCGCGCGGGGCCAgCGCCa -3' miRNA: 3'- ugCCAa-CC-GUGCGUCCCGGUgGCGGc -5' |
|||||||
13284 | 3' | -62.7 | NC_003409.1 | + | 31385 | 1.07 | 0.000873 |
Target: 5'- aACGGUUGGCACGCAGGGCCACCGCCGu -3' miRNA: 3'- -UGCCAACCGUGCGUCCCGGUGGCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home