miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13284 5' -56.6 NC_003409.1 + 31351 1.1 0.001413
Target:  5'- cUGCAGCAGCAGCCGCAGUAGAUCCACa -3'
miRNA:   3'- -ACGUCGUCGUCGGCGUCAUCUAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 11827 0.79 0.188307
Target:  5'- cGCAGCGGuCGGCCGUguaGGUGGucUCCACg -3'
miRNA:   3'- aCGUCGUC-GUCGGCG---UCAUCu-AGGUG- -5'
13284 5' -56.6 NC_003409.1 + 20203 0.77 0.267363
Target:  5'- cGuCAGCuGCAGCCGUAGUGGcUCUAUa -3'
miRNA:   3'- aC-GUCGuCGUCGGCGUCAUCuAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 125675 0.75 0.338906
Target:  5'- aGCAGCAGgAGCCacaGCAGcgGGAgCCACa -3'
miRNA:   3'- aCGUCGUCgUCGG---CGUCa-UCUaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 125555 0.74 0.371177
Target:  5'- aGCAGCGGgAGCCacaGCAGcGGAgCCACa -3'
miRNA:   3'- aCGUCGUCgUCGG---CGUCaUCUaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 125645 0.74 0.396721
Target:  5'- aGCAGCGGgAGCCccaGCAGcgGGAgCCACa -3'
miRNA:   3'- aCGUCGUCgUCGG---CGUCa-UCUaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 125615 0.74 0.396721
Target:  5'- aGCAGCGGgAGCCacaGCAGcgGGAgCCACa -3'
miRNA:   3'- aCGUCGUCgUCGG---CGUCa-UCUaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 83388 0.73 0.405483
Target:  5'- gUGCAGCGGCaacccgGGCCGCAaugGGGUCgGCc -3'
miRNA:   3'- -ACGUCGUCG------UCGGCGUca-UCUAGgUG- -5'
13284 5' -56.6 NC_003409.1 + 109912 0.73 0.414366
Target:  5'- cGCAGUaAGgGGCCGCaaGGUGGA-CCACa -3'
miRNA:   3'- aCGUCG-UCgUCGGCG--UCAUCUaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 67805 0.73 0.414366
Target:  5'- gGUGGguGCGGCgCGCAGggGGcgCCACg -3'
miRNA:   3'- aCGUCguCGUCG-GCGUCa-UCuaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 125750 0.72 0.451059
Target:  5'- aGCAGCAGgAGCCacaGCAGcAGGagCCACa -3'
miRNA:   3'- aCGUCGUCgUCGG---CGUCaUCUa-GGUG- -5'
13284 5' -56.6 NC_003409.1 + 125780 0.72 0.451059
Target:  5'- aGCAGCAGgAGCCacaGCAGcAGGagCCACa -3'
miRNA:   3'- aCGUCGUCgUCGG---CGUCaUCUa-GGUG- -5'
13284 5' -56.6 NC_003409.1 + 125720 0.72 0.451059
Target:  5'- aGCAGCAGgAGCCacaGCAGcAGGagCCACa -3'
miRNA:   3'- aCGUCGUCgUCGG---CGUCaUCUa-GGUG- -5'
13284 5' -56.6 NC_003409.1 + 111045 0.72 0.499304
Target:  5'- cGCGGCG--GGCCGCAGcacgAGAguUCCACg -3'
miRNA:   3'- aCGUCGUcgUCGGCGUCa---UCU--AGGUG- -5'
13284 5' -56.6 NC_003409.1 + 110891 0.71 0.55999
Target:  5'- gUGCuGCGGCccGCCGCGGUcauuGAcCCACg -3'
miRNA:   3'- -ACGuCGUCGu-CGGCGUCAu---CUaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 125585 0.71 0.55999
Target:  5'- aGCAGCGGgAGCCacaGCAGcgGGAgCCACn -3'
miRNA:   3'- aCGUCGUCgUCGG---CGUCa-UCUaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 10020 0.7 0.570324
Target:  5'- cGCuGCuGcCGGCgGCGGgGGGUCCACg -3'
miRNA:   3'- aCGuCGuC-GUCGgCGUCaUCUAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 85105 0.7 0.591124
Target:  5'- gGgGGUucuGCAGCCGCAGgcGAUauuaCACg -3'
miRNA:   3'- aCgUCGu--CGUCGGCGUCauCUAg---GUG- -5'
13284 5' -56.6 NC_003409.1 + 125936 0.7 0.591124
Target:  5'- aGCAGCAGgAGCCccuGCAGgag--CCACa -3'
miRNA:   3'- aCGUCGUCgUCGG---CGUCaucuaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 125879 0.7 0.591124
Target:  5'- aGCAGCAGgAGCCccuGCAGgag--CCACa -3'
miRNA:   3'- aCGUCGUCgUCGG---CGUCaucuaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.