miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13284 5' -56.6 NC_003409.1 + 20203 0.77 0.267363
Target:  5'- cGuCAGCuGCAGCCGUAGUGGcUCUAUa -3'
miRNA:   3'- aC-GUCGuCGUCGGCGUCAUCuAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 10020 0.7 0.570324
Target:  5'- cGCuGCuGcCGGCgGCGGgGGGUCCACg -3'
miRNA:   3'- aCGuCGuC-GUCGgCGUCaUCUAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 47330 0.69 0.654023
Target:  5'- cUGCAGCAGCuGuuGguGUA---CCACa -3'
miRNA:   3'- -ACGUCGUCGuCggCguCAUcuaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 38617 0.66 0.838853
Target:  5'- uUGCGcGCcgaGGC-GCCGCAGUc-GUCCGCu -3'
miRNA:   3'- -ACGU-CG---UCGuCGGCGUCAucUAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 132814 0.69 0.674934
Target:  5'- gGCGcGCGGCGcGCUGCAGUAccUCCAa -3'
miRNA:   3'- aCGU-CGUCGU-CGGCGUCAUcuAGGUg -5'
13284 5' -56.6 NC_003409.1 + 110891 0.71 0.55999
Target:  5'- gUGCuGCGGCccGCCGCGGUcauuGAcCCACg -3'
miRNA:   3'- -ACGuCGUCGu-CGGCGUCAu---CUaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 19218 0.68 0.736475
Target:  5'- cGUAGUAcGCGGCUGCAGcgacguGAUCUAUc -3'
miRNA:   3'- aCGUCGU-CGUCGGCGUCau----CUAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 85872 0.67 0.785223
Target:  5'- gGUGGCGGCAGUgcgaCGCA--AGuAUCCACa -3'
miRNA:   3'- aCGUCGUCGUCG----GCGUcaUC-UAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 31197 0.66 0.812814
Target:  5'- cUGCGGCuGCuGCUGCAGaGGAggaCgGCg -3'
miRNA:   3'- -ACGUCGuCGuCGGCGUCaUCUa--GgUG- -5'
13284 5' -56.6 NC_003409.1 + 67805 0.73 0.414366
Target:  5'- gGUGGguGCGGCgCGCAGggGGcgCCACg -3'
miRNA:   3'- aCGUCguCGUCG-GCGUCa-UCuaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 83388 0.73 0.405483
Target:  5'- gUGCAGCGGCaacccgGGCCGCAaugGGGUCgGCc -3'
miRNA:   3'- -ACGUCGUCG------UCGGCGUca-UCUAGgUG- -5'
13284 5' -56.6 NC_003409.1 + 111045 0.72 0.499304
Target:  5'- cGCGGCG--GGCCGCAGcacgAGAguUCCACg -3'
miRNA:   3'- aCGUCGUcgUCGGCGUCa---UCU--AGGUG- -5'
13284 5' -56.6 NC_003409.1 + 85105 0.7 0.591124
Target:  5'- gGgGGUucuGCAGCCGCAGgcGAUauuaCACg -3'
miRNA:   3'- aCgUCGu--CGUCGGCGUCauCUAg---GUG- -5'
13284 5' -56.6 NC_003409.1 + 109944 0.69 0.674934
Target:  5'- cGCAGCAGUccagaAGCCGUGucGGAUUCAUc -3'
miRNA:   3'- aCGUCGUCG-----UCGGCGUcaUCUAGGUG- -5'
13284 5' -56.6 NC_003409.1 + 93544 0.68 0.695697
Target:  5'- gGCGGCGGCAGUCGCcacgc--CCACa -3'
miRNA:   3'- aCGUCGUCGUCGGCGucaucuaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 125981 0.68 0.716237
Target:  5'- aGCAGCAGgAGCCacaacaGCAGgag--CCACa -3'
miRNA:   3'- aCGUCGUCgUCGG------CGUCaucuaGGUG- -5'
13284 5' -56.6 NC_003409.1 + 106382 0.68 0.740479
Target:  5'- aGCAGUGGCAG-CGCucuGUAGGuaugccuguagacuuUCCACc -3'
miRNA:   3'- aCGUCGUCGUCgGCGu--CAUCU---------------AGGUG- -5'
13284 5' -56.6 NC_003409.1 + 125091 0.66 0.818154
Target:  5'- aGCAGCAGCAGCaggaugagcagcaGCAGcaGGAUgaACa -3'
miRNA:   3'- aCGUCGUCGUCGg------------CGUCa-UCUAggUG- -5'
13284 5' -56.6 NC_003409.1 + 113521 0.66 0.821678
Target:  5'- gUGCGgcGCAGCAGCUGCu-UGGcgcCCACg -3'
miRNA:   3'- -ACGU--CGUCGUCGGCGucAUCua-GGUG- -5'
13284 5' -56.6 NC_003409.1 + 59962 0.66 0.830361
Target:  5'- cGCGGCGGUGGCCGUAuaucGggCCAa -3'
miRNA:   3'- aCGUCGUCGUCGGCGUcau-CuaGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.