Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13284 | 5' | -56.6 | NC_003409.1 | + | 106382 | 0.68 | 0.740479 |
Target: 5'- aGCAGUGGCAG-CGCucuGUAGGuaugccuguagacuuUCCACc -3' miRNA: 3'- aCGUCGUCGUCgGCGu--CAUCU---------------AGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 109912 | 0.73 | 0.414366 |
Target: 5'- cGCAGUaAGgGGCCGCaaGGUGGA-CCACa -3' miRNA: 3'- aCGUCG-UCgUCGGCG--UCAUCUaGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 109944 | 0.69 | 0.674934 |
Target: 5'- cGCAGCAGUccagaAGCCGUGucGGAUUCAUc -3' miRNA: 3'- aCGUCGUCG-----UCGGCGUcaUCUAGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 110891 | 0.71 | 0.55999 |
Target: 5'- gUGCuGCGGCccGCCGCGGUcauuGAcCCACg -3' miRNA: 3'- -ACGuCGUCGu-CGGCGUCAu---CUaGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 111045 | 0.72 | 0.499304 |
Target: 5'- cGCGGCG--GGCCGCAGcacgAGAguUCCACg -3' miRNA: 3'- aCGUCGUcgUCGGCGUCa---UCU--AGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 113521 | 0.66 | 0.821678 |
Target: 5'- gUGCGgcGCAGCAGCUGCu-UGGcgcCCACg -3' miRNA: 3'- -ACGU--CGUCGUCGGCGucAUCua-GGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125091 | 0.66 | 0.818154 |
Target: 5'- aGCAGCAGCAGCaggaugagcagcaGCAGcaGGAUgaACa -3' miRNA: 3'- aCGUCGUCGUCGg------------CGUCa-UCUAggUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125145 | 0.66 | 0.790854 |
Target: 5'- aGCAGCAGCAGCaggaugagcagcaGCAGcaGGAUgaGCa -3' miRNA: 3'- aCGUCGUCGUCGg------------CGUCa-UCUAggUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125555 | 0.74 | 0.371177 |
Target: 5'- aGCAGCGGgAGCCacaGCAGcGGAgCCACa -3' miRNA: 3'- aCGUCGUCgUCGG---CGUCaUCUaGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125585 | 0.71 | 0.55999 |
Target: 5'- aGCAGCGGgAGCCacaGCAGcgGGAgCCACn -3' miRNA: 3'- aCGUCGUCgUCGG---CGUCa-UCUaGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125615 | 0.74 | 0.396721 |
Target: 5'- aGCAGCGGgAGCCacaGCAGcgGGAgCCACa -3' miRNA: 3'- aCGUCGUCgUCGG---CGUCa-UCUaGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125645 | 0.74 | 0.396721 |
Target: 5'- aGCAGCGGgAGCCccaGCAGcgGGAgCCACa -3' miRNA: 3'- aCGUCGUCgUCGG---CGUCa-UCUaGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125675 | 0.75 | 0.338906 |
Target: 5'- aGCAGCAGgAGCCacaGCAGcgGGAgCCACa -3' miRNA: 3'- aCGUCGUCgUCGG---CGUCa-UCUaGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125720 | 0.72 | 0.451059 |
Target: 5'- aGCAGCAGgAGCCacaGCAGcAGGagCCACa -3' miRNA: 3'- aCGUCGUCgUCGG---CGUCaUCUa-GGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125750 | 0.72 | 0.451059 |
Target: 5'- aGCAGCAGgAGCCacaGCAGcAGGagCCACa -3' miRNA: 3'- aCGUCGUCgUCGG---CGUCaUCUa-GGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125780 | 0.72 | 0.451059 |
Target: 5'- aGCAGCAGgAGCCacaGCAGcAGGagCCACa -3' miRNA: 3'- aCGUCGUCgUCGG---CGUCaUCUa-GGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125837 | 0.7 | 0.591124 |
Target: 5'- aGCAGCAGgAGCCccuGCAGgag--CCACa -3' miRNA: 3'- aCGUCGUCgUCGG---CGUCaucuaGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125879 | 0.7 | 0.591124 |
Target: 5'- aGCAGCAGgAGCCccuGCAGgag--CCACa -3' miRNA: 3'- aCGUCGUCgUCGG---CGUCaucuaGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125936 | 0.7 | 0.591124 |
Target: 5'- aGCAGCAGgAGCCccuGCAGgag--CCACa -3' miRNA: 3'- aCGUCGUCgUCGG---CGUCaucuaGGUG- -5' |
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13284 | 5' | -56.6 | NC_003409.1 | + | 125981 | 0.68 | 0.716237 |
Target: 5'- aGCAGCAGgAGCCacaacaGCAGgag--CCACa -3' miRNA: 3'- aCGUCGUCgUCGG------CGUCaucuaGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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