miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13285 5' -57.7 NC_003409.1 + 32536 0.66 0.869219
Target:  5'- cCGA-GCauGGCACAG-GGCC-UGUACGu -3'
miRNA:   3'- -GCUgCG--CCGUGUCaCCGGcACAUGCc -5'
13285 5' -57.7 NC_003409.1 + 113590 0.66 0.86186
Target:  5'- cCGuCGCuGGCGCAGgcgaucGCCGUGuUGCGc -3'
miRNA:   3'- -GCuGCG-CCGUGUCac----CGGCAC-AUGCc -5'
13285 5' -57.7 NC_003409.1 + 86602 0.66 0.853536
Target:  5'- uGACGCgGGCGaggcaauguuaugUAGcUGGCC-UGUugGGg -3'
miRNA:   3'- gCUGCG-CCGU-------------GUC-ACCGGcACAugCC- -5'
13285 5' -57.7 NC_003409.1 + 118860 0.66 0.846551
Target:  5'- uGGCuaacaCGGCugGaGUGGCgGUGgGCGGg -3'
miRNA:   3'- gCUGc----GCCGugU-CACCGgCACaUGCC- -5'
13285 5' -57.7 NC_003409.1 + 110047 0.66 0.846551
Target:  5'- gGugGCaaggccguaggGGUACGGUGGCaGUGUugcgcCGGg -3'
miRNA:   3'- gCugCG-----------CCGUGUCACCGgCACAu----GCC- -5'
13285 5' -57.7 NC_003409.1 + 100880 0.66 0.84181
Target:  5'- gGAaGCGGCaaaaGCgccacagacucacaaAGUGGCCGgugugugGUACGGa -3'
miRNA:   3'- gCUgCGCCG----UG---------------UCACCGGCa------CAUGCC- -5'
13285 5' -57.7 NC_003409.1 + 24211 0.66 0.838613
Target:  5'- --cUGCGcGCGCGGcGGCaCGUGggACGGa -3'
miRNA:   3'- gcuGCGC-CGUGUCaCCG-GCACa-UGCC- -5'
13285 5' -57.7 NC_003409.1 + 45464 0.66 0.836196
Target:  5'- gGAUGUGGCGCAGaccgugcuuguuaaUGGCUuugGUGCGu -3'
miRNA:   3'- gCUGCGCCGUGUC--------------ACCGGca-CAUGCc -5'
13285 5' -57.7 NC_003409.1 + 59967 0.67 0.805127
Target:  5'- uGucuCGCGGC--GGUGGCCGUaUAuCGGg -3'
miRNA:   3'- gCu--GCGCCGugUCACCGGCAcAU-GCC- -5'
13285 5' -57.7 NC_003409.1 + 110969 0.67 0.805127
Target:  5'- aGAUGCGGUAUAGgcgacGGgCGaUGUGCuGGg -3'
miRNA:   3'- gCUGCGCCGUGUCa----CCgGC-ACAUG-CC- -5'
13285 5' -57.7 NC_003409.1 + 81557 0.67 0.78745
Target:  5'- uGAC-CGGCGCuGUGGCCcggggaGUG-AUGGa -3'
miRNA:   3'- gCUGcGCCGUGuCACCGG------CACaUGCC- -5'
13285 5' -57.7 NC_003409.1 + 120208 0.68 0.759948
Target:  5'- uCGACGUccaggcggcuGGCACAcgGGCCGUGaGCGc -3'
miRNA:   3'- -GCUGCG----------CCGUGUcaCCGGCACaUGCc -5'
13285 5' -57.7 NC_003409.1 + 88023 0.68 0.759948
Target:  5'- cCGGCGUcGCACAGacGCCGgggGaUACGGg -3'
miRNA:   3'- -GCUGCGcCGUGUCacCGGCa--C-AUGCC- -5'
13285 5' -57.7 NC_003409.1 + 45870 0.68 0.750551
Target:  5'- aGACGCGGCAUAc--GCCGcg-ACGGg -3'
miRNA:   3'- gCUGCGCCGUGUcacCGGCacaUGCC- -5'
13285 5' -57.7 NC_003409.1 + 87520 0.68 0.731467
Target:  5'- -cGCGCGaGCACAuUGGCCGcuUugGGg -3'
miRNA:   3'- gcUGCGC-CGUGUcACCGGCacAugCC- -5'
13285 5' -57.7 NC_003409.1 + 40537 0.69 0.682459
Target:  5'- gGACGCGGCcguuCGGUGGCgCcaGUGCaGGc -3'
miRNA:   3'- gCUGCGCCGu---GUCACCG-GcaCAUG-CC- -5'
13285 5' -57.7 NC_003409.1 + 127543 0.7 0.622414
Target:  5'- gCGGCGCGuGCcauCGGUGGCCaucgGCGGu -3'
miRNA:   3'- -GCUGCGC-CGu--GUCACCGGcacaUGCC- -5'
13285 5' -57.7 NC_003409.1 + 88705 0.7 0.612387
Target:  5'- -uGCGUGGaacCAGgagGGCCGUcGUGCGGa -3'
miRNA:   3'- gcUGCGCCgu-GUCa--CCGGCA-CAUGCC- -5'
13285 5' -57.7 NC_003409.1 + 25940 0.72 0.49499
Target:  5'- cCGGCGCGGCGuCGGUauGGCa--GUACGGu -3'
miRNA:   3'- -GCUGCGCCGU-GUCA--CCGgcaCAUGCC- -5'
13285 5' -57.7 NC_003409.1 + 54409 0.73 0.467139
Target:  5'- gCGugGCGGgAUGGU-GCCGUGUGCa- -3'
miRNA:   3'- -GCugCGCCgUGUCAcCGGCACAUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.