miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13286 5' -48.6 NC_003409.1 + 36603 0.66 0.999061
Target:  5'- ---gAGGGAacACCACUGcUGGGGAg-- -3'
miRNA:   3'- gggaUUCCU--UGGUGACaACCUCUaug -5'
13286 5' -48.6 NC_003409.1 + 109109 0.66 0.999061
Target:  5'- ----cAGGAGCCACUGUcccGGAGccgGCu -3'
miRNA:   3'- gggauUCCUUGGUGACAa--CCUCua-UG- -5'
13286 5' -48.6 NC_003409.1 + 8715 0.66 0.998851
Target:  5'- aCCCUGGGGAcugucAUC-CUGUUGGuc-UGCu -3'
miRNA:   3'- -GGGAUUCCU-----UGGuGACAACCucuAUG- -5'
13286 5' -48.6 NC_003409.1 + 74177 0.66 0.998851
Target:  5'- gUCUGAGGGACCAUc---GGAGGcACa -3'
miRNA:   3'- gGGAUUCCUUGGUGacaaCCUCUaUG- -5'
13286 5' -48.6 NC_003409.1 + 133240 0.66 0.998546
Target:  5'- -gCUGGGGGAUCAUccuucucagGGAGAUGCa -3'
miRNA:   3'- ggGAUUCCUUGGUGacaa-----CCUCUAUG- -5'
13286 5' -48.6 NC_003409.1 + 118333 0.66 0.998307
Target:  5'- uUCCUGGGGugcGCCGCgccggGUuccUGG-GGUGCg -3'
miRNA:   3'- -GGGAUUCCu--UGGUGa----CA---ACCuCUAUG- -5'
13286 5' -48.6 NC_003409.1 + 118425 0.66 0.998307
Target:  5'- uUCCUGGGGugcGCCGCgccggGUuccUGG-GGUGCg -3'
miRNA:   3'- -GGGAUUCCu--UGGUGa----CA---ACCuCUAUG- -5'
13286 5' -48.6 NC_003409.1 + 118379 0.66 0.998307
Target:  5'- uUCCUGGGGugcGCCGCgccggGUuccUGG-GGUGCg -3'
miRNA:   3'- -GGGAUUCCu--UGGUGa----CA---ACCuCUAUG- -5'
13286 5' -48.6 NC_003409.1 + 125826 0.67 0.99756
Target:  5'- cCCCUGcAGGAGCCACaacagcaGGAGccACa -3'
miRNA:   3'- -GGGAU-UCCUUGGUGacaa---CCUCuaUG- -5'
13286 5' -48.6 NC_003409.1 + 125868 0.67 0.99756
Target:  5'- cCCCUGcAGGAGCCACaacagcaGGAGccACa -3'
miRNA:   3'- -GGGAU-UCCUUGGUGacaa---CCUCuaUG- -5'
13286 5' -48.6 NC_003409.1 + 125925 0.67 0.99756
Target:  5'- cCCCUGcAGGAGCCACaacagcaGGAGccACa -3'
miRNA:   3'- -GGGAU-UCCUUGGUGacaa---CCUCuaUG- -5'
13286 5' -48.6 NC_003409.1 + 133868 0.67 0.997094
Target:  5'- uCCCUGGGGGcagaccugcuACCGCUGgcGGuGcagGCu -3'
miRNA:   3'- -GGGAUUCCU----------UGGUGACaaCCuCua-UG- -5'
13286 5' -48.6 NC_003409.1 + 77890 0.67 0.997094
Target:  5'- gCCUAAucgacGGAggcuACCGCgg--GGAGAUACa -3'
miRNA:   3'- gGGAUU-----CCU----UGGUGacaaCCUCUAUG- -5'
13286 5' -48.6 NC_003409.1 + 15377 0.67 0.997094
Target:  5'- aCCCUGAGGAuucaAUUGCUGUUcGAGcaGCa -3'
miRNA:   3'- -GGGAUUCCU----UGGUGACAAcCUCuaUG- -5'
13286 5' -48.6 NC_003409.1 + 70474 0.67 0.996557
Target:  5'- aUCUaAAGGucCUugUGUUGGGGAUGg -3'
miRNA:   3'- -GGGaUUCCuuGGugACAACCUCUAUg -5'
13286 5' -48.6 NC_003409.1 + 32058 0.68 0.99353
Target:  5'- cCCC--GGGAGCCACgugUGGAG-UAUc -3'
miRNA:   3'- -GGGauUCCUUGGUGacaACCUCuAUG- -5'
13286 5' -48.6 NC_003409.1 + 95615 0.68 0.990088
Target:  5'- gCCCaAAGGGACCaACUGgUGuGAGAg-- -3'
miRNA:   3'- -GGGaUUCCUUGG-UGACaAC-CUCUaug -5'
13286 5' -48.6 NC_003409.1 + 128542 0.69 0.987091
Target:  5'- aCCgUGAGGcuGCCGCg--UGGGGAUAa -3'
miRNA:   3'- -GGgAUUCCu-UGGUGacaACCUCUAUg -5'
13286 5' -48.6 NC_003409.1 + 106908 0.69 0.985353
Target:  5'- gCCCUucuuggugAGGGGACCACguUGgcgcUGGAGAcACu -3'
miRNA:   3'- -GGGA--------UUCCUUGGUG--ACa---ACCUCUaUG- -5'
13286 5' -48.6 NC_003409.1 + 74028 0.7 0.976571
Target:  5'- gCCggcaGAGGGACUACUGUUGGcaacUGCa -3'
miRNA:   3'- gGGa---UUCCUUGGUGACAACCucu-AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.