Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13286 | 5' | -48.6 | NC_003409.1 | + | 109109 | 0.66 | 0.999061 |
Target: 5'- ----cAGGAGCCACUGUcccGGAGccgGCu -3' miRNA: 3'- gggauUCCUUGGUGACAa--CCUCua-UG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 36603 | 0.66 | 0.999061 |
Target: 5'- ---gAGGGAacACCACUGcUGGGGAg-- -3' miRNA: 3'- gggaUUCCU--UGGUGACaACCUCUaug -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 74177 | 0.66 | 0.998851 |
Target: 5'- gUCUGAGGGACCAUc---GGAGGcACa -3' miRNA: 3'- gGGAUUCCUUGGUGacaaCCUCUaUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 8715 | 0.66 | 0.998851 |
Target: 5'- aCCCUGGGGAcugucAUC-CUGUUGGuc-UGCu -3' miRNA: 3'- -GGGAUUCCU-----UGGuGACAACCucuAUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 133240 | 0.66 | 0.998546 |
Target: 5'- -gCUGGGGGAUCAUccuucucagGGAGAUGCa -3' miRNA: 3'- ggGAUUCCUUGGUGacaa-----CCUCUAUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 118425 | 0.66 | 0.998307 |
Target: 5'- uUCCUGGGGugcGCCGCgccggGUuccUGG-GGUGCg -3' miRNA: 3'- -GGGAUUCCu--UGGUGa----CA---ACCuCUAUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 118379 | 0.66 | 0.998307 |
Target: 5'- uUCCUGGGGugcGCCGCgccggGUuccUGG-GGUGCg -3' miRNA: 3'- -GGGAUUCCu--UGGUGa----CA---ACCuCUAUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 118333 | 0.66 | 0.998307 |
Target: 5'- uUCCUGGGGugcGCCGCgccggGUuccUGG-GGUGCg -3' miRNA: 3'- -GGGAUUCCu--UGGUGa----CA---ACCuCUAUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 125925 | 0.67 | 0.99756 |
Target: 5'- cCCCUGcAGGAGCCACaacagcaGGAGccACa -3' miRNA: 3'- -GGGAU-UCCUUGGUGacaa---CCUCuaUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 125826 | 0.67 | 0.99756 |
Target: 5'- cCCCUGcAGGAGCCACaacagcaGGAGccACa -3' miRNA: 3'- -GGGAU-UCCUUGGUGacaa---CCUCuaUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 125868 | 0.67 | 0.99756 |
Target: 5'- cCCCUGcAGGAGCCACaacagcaGGAGccACa -3' miRNA: 3'- -GGGAU-UCCUUGGUGacaa---CCUCuaUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 133868 | 0.67 | 0.997094 |
Target: 5'- uCCCUGGGGGcagaccugcuACCGCUGgcGGuGcagGCu -3' miRNA: 3'- -GGGAUUCCU----------UGGUGACaaCCuCua-UG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 77890 | 0.67 | 0.997094 |
Target: 5'- gCCUAAucgacGGAggcuACCGCgg--GGAGAUACa -3' miRNA: 3'- gGGAUU-----CCU----UGGUGacaaCCUCUAUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 15377 | 0.67 | 0.997094 |
Target: 5'- aCCCUGAGGAuucaAUUGCUGUUcGAGcaGCa -3' miRNA: 3'- -GGGAUUCCU----UGGUGACAAcCUCuaUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 70474 | 0.67 | 0.996557 |
Target: 5'- aUCUaAAGGucCUugUGUUGGGGAUGg -3' miRNA: 3'- -GGGaUUCCuuGGugACAACCUCUAUg -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 32058 | 0.68 | 0.99353 |
Target: 5'- cCCC--GGGAGCCACgugUGGAG-UAUc -3' miRNA: 3'- -GGGauUCCUUGGUGacaACCUCuAUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 95615 | 0.68 | 0.990088 |
Target: 5'- gCCCaAAGGGACCaACUGgUGuGAGAg-- -3' miRNA: 3'- -GGGaUUCCUUGG-UGACaAC-CUCUaug -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 128542 | 0.69 | 0.987091 |
Target: 5'- aCCgUGAGGcuGCCGCg--UGGGGAUAa -3' miRNA: 3'- -GGgAUUCCu-UGGUGacaACCUCUAUg -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 106908 | 0.69 | 0.985353 |
Target: 5'- gCCCUucuuggugAGGGGACCACguUGgcgcUGGAGAcACu -3' miRNA: 3'- -GGGA--------UUCCUUGGUG--ACa---ACCUCUaUG- -5' |
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13286 | 5' | -48.6 | NC_003409.1 | + | 74028 | 0.7 | 0.976571 |
Target: 5'- gCCggcaGAGGGACUACUGUUGGcaacUGCa -3' miRNA: 3'- gGGa---UUCCUUGGUGACAACCucu-AUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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