miRNA display CGI

Results 1 - 7 of 7 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
13287	3'	-59.6	NC_003409.1	+	15661	0.66	0.728972
	Target:  5'- gGGGCU-CUUCCagaucaaACgCGGACCGGGAg- -3' miRNA:   3'- gUCUGAcGGAGG-------UG-GCCUGGCCCUau -5'
13287	3'	-59.6	NC_003409.1	+	18959	0.66	0.720181
	Target:  5'- uGGACUGCCcCCGCgGGGCCa----- -3' miRNA:   3'- gUCUGACGGaGGUGgCCUGGcccuau -5'
13287	3'	-59.6	NC_003409.1	+	33187	1.07	0.001636
	Target:  5'- aCAGACUGCCUCCACCGGACCGGGAUAg -3' miRNA:   3'- -GUCUGACGGAGGUGGCCUGGCCCUAU- -5'
13287	3'	-59.6	NC_003409.1	+	38652	0.69	0.530089
	Target:  5'- gCGGACUGCCguugCCAgaGGAacaUCGGGAUu -3' miRNA:   3'- -GUCUGACGGa---GGUggCCU---GGCCCUAu -5'
13287	3'	-59.6	NC_003409.1	+	95667	0.7	0.491621
	Target:  5'- -cGGCUGCCUCCuggaguCCGGuauagaAUCGGGAa- -3' miRNA:   3'- guCUGACGGAGGu-----GGCC------UGGCCCUau -5'
13287	3'	-59.6	NC_003409.1	+	133048	0.69	0.539882
	Target:  5'- gCAGG-UGCCUcaCCACCgGGGCCGGGu-- -3' miRNA:   3'- -GUCUgACGGA--GGUGG-CCUGGCCCuau -5'
13287	3'	-59.6	NC_003409.1	+	133859	0.66	0.717236
	Target:  5'- gCAGAcCUGCUaCCGCUGGcggugcaggcuucaACCGGGGa- -3' miRNA:   3'- -GUCU-GACGGaGGUGGCC--------------UGGCCCUau -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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