miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13287 5' -54 NC_003409.1 + 6533 0.66 0.932756
Target:  5'- cCUGGCCCAcuguGCUcAGUAaugacaGGACCUCg -3'
miRNA:   3'- cGACCGGGUu---UGA-UCGUc-----UCUGGAGa -5'
13287 5' -54 NC_003409.1 + 123729 0.66 0.927418
Target:  5'- cCUGGCUgGGuuaaUGGCAGGGGCUUUUa -3'
miRNA:   3'- cGACCGGgUUug--AUCGUCUCUGGAGA- -5'
13287 5' -54 NC_003409.1 + 54950 0.66 0.921826
Target:  5'- gGCcGGCCacugCAGAUUGGCuG-GACCUCg -3'
miRNA:   3'- -CGaCCGG----GUUUGAUCGuCuCUGGAGa -5'
13287 5' -54 NC_003409.1 + 108210 0.66 0.921826
Target:  5'- uUUGGCCuCuuGCUgcAGUAGGGACgUCUu -3'
miRNA:   3'- cGACCGG-GuuUGA--UCGUCUCUGgAGA- -5'
13287 5' -54 NC_003409.1 + 92753 0.67 0.909879
Target:  5'- cCUGGCCUGAACccauGaCAGAGGCCcCa -3'
miRNA:   3'- cGACCGGGUUUGau--C-GUCUCUGGaGa -5'
13287 5' -54 NC_003409.1 + 126705 0.67 0.902879
Target:  5'- uCUGGCCUuccuguaGGACUugaaAGCGGuGGCCUUUg -3'
miRNA:   3'- cGACCGGG-------UUUGA----UCGUCuCUGGAGA- -5'
13287 5' -54 NC_003409.1 + 60827 0.67 0.896928
Target:  5'- cGCgGGCCCGgu-UAGUGG-GACCUCa -3'
miRNA:   3'- -CGaCCGGGUuugAUCGUCuCUGGAGa -5'
13287 5' -54 NC_003409.1 + 43049 0.69 0.835705
Target:  5'- aGgaGGCCC-AACaAGCAGAGACaguauaUCg -3'
miRNA:   3'- -CgaCCGGGuUUGaUCGUCUCUGg-----AGa -5'
13287 5' -54 NC_003409.1 + 129700 0.69 0.835705
Target:  5'- cCUGGCCCAAGa-AGCAGuc-CCUCg -3'
miRNA:   3'- cGACCGGGUUUgaUCGUCucuGGAGa -5'
13287 5' -54 NC_003409.1 + 95504 0.69 0.800147
Target:  5'- aCUGGCUCGAGuCUgAGCGccucuuguGAGGCCUCUu -3'
miRNA:   3'- cGACCGGGUUU-GA-UCGU--------CUCUGGAGA- -5'
13287 5' -54 NC_003409.1 + 76049 0.7 0.79083
Target:  5'- --gGGaCCAGACUAGCAGcuGGAUCUCc -3'
miRNA:   3'- cgaCCgGGUUUGAUCGUC--UCUGGAGa -5'
13287 5' -54 NC_003409.1 + 73500 0.7 0.762006
Target:  5'- aCUGGCUCAG---GGCAGGGGCgCUCa -3'
miRNA:   3'- cGACCGGGUUugaUCGUCUCUG-GAGa -5'
13287 5' -54 NC_003409.1 + 77516 0.7 0.762006
Target:  5'- aGUUGGCCguAACccAGCAGuGACCUa- -3'
miRNA:   3'- -CGACCGGguUUGa-UCGUCuCUGGAga -5'
13287 5' -54 NC_003409.1 + 13444 0.71 0.732079
Target:  5'- cCUuGCCUAAACaUAGCGGAGACCg-- -3'
miRNA:   3'- cGAcCGGGUUUG-AUCGUCUCUGGaga -5'
13287 5' -54 NC_003409.1 + 97689 0.72 0.65949
Target:  5'- aUUGGCCuCAcccGGCUuGCAGAGACCUa- -3'
miRNA:   3'- cGACCGG-GU---UUGAuCGUCUCUGGAga -5'
13287 5' -54 NC_003409.1 + 14192 0.72 0.638395
Target:  5'- cCUGcGCuCCGAGCUGGCAGAGcACCcCg -3'
miRNA:   3'- cGAC-CG-GGUUUGAUCGUCUC-UGGaGa -5'
13287 5' -54 NC_003409.1 + 68090 0.78 0.349453
Target:  5'- gGCguaugGGCCCGu-CUGGcCAGAGGCCUCg -3'
miRNA:   3'- -CGa----CCGGGUuuGAUC-GUCUCUGGAGa -5'
13287 5' -54 NC_003409.1 + 32298 0.82 0.204382
Target:  5'- aGCUGGCauCCAGGCUGGCGGAcACCUCc -3'
miRNA:   3'- -CGACCG--GGUUUGAUCGUCUcUGGAGa -5'
13287 5' -54 NC_003409.1 + 33152 1.11 0.002593
Target:  5'- cGCUGGCCCAAACUAGCAGAGACCUCUg -3'
miRNA:   3'- -CGACCGGGUUUGAUCGUCUCUGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.