miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13288 5' -57.2 NC_003409.1 + 54871 0.66 0.823269
Target:  5'- gAGUCCuCGGgcagGGUuucgGGCGGCgGGUGAg -3'
miRNA:   3'- -UCAGG-GUCaaa-CCG----CCGCCG-CUACUg -5'
13288 5' -57.2 NC_003409.1 + 115646 0.66 0.805817
Target:  5'- uAGUUCCGGUaUGccgcucgcggguGCGGUGGUGGUGuCu -3'
miRNA:   3'- -UCAGGGUCAaAC------------CGCCGCCGCUACuG- -5'
13288 5' -57.2 NC_003409.1 + 133445 0.67 0.787731
Target:  5'- gGGUCCCAGggccggUUcGGUGGCauacaGGcCGGUGAg -3'
miRNA:   3'- -UCAGGGUCa-----AA-CCGCCG-----CC-GCUACUg -5'
13288 5' -57.2 NC_003409.1 + 22989 0.67 0.778471
Target:  5'- cGGUCCCAGaaaaGGUcgccgaGGUGGCaaGGUGACu -3'
miRNA:   3'- -UCAGGGUCaaa-CCG------CCGCCG--CUACUG- -5'
13288 5' -57.2 NC_003409.1 + 45567 0.67 0.777538
Target:  5'- gGGUCCCGcUUUGugaucacGCGaGCGGCcugGGUGACg -3'
miRNA:   3'- -UCAGGGUcAAAC-------CGC-CGCCG---CUACUG- -5'
13288 5' -57.2 NC_003409.1 + 133096 0.67 0.759566
Target:  5'- cGGUCCgGaugccgUGaaGGCGGCGGUGGCa -3'
miRNA:   3'- -UCAGGgUcaa---ACcgCCGCCGCUACUG- -5'
13288 5' -57.2 NC_003409.1 + 110773 0.67 0.759566
Target:  5'- gGGUUCCGGUcgguuuauUUGGggugauugugagUGGCGGCG-UGGCg -3'
miRNA:   3'- -UCAGGGUCA--------AACC------------GCCGCCGCuACUG- -5'
13288 5' -57.2 NC_003409.1 + 43118 0.67 0.758608
Target:  5'- aGGUCCUugaacucGGUaUUGacgcaaGCGGCGGCGAgGGCg -3'
miRNA:   3'- -UCAGGG-------UCA-AAC------CGCCGCCGCUaCUG- -5'
13288 5' -57.2 NC_003409.1 + 110287 0.68 0.749938
Target:  5'- cGUCCUucguGGUgcGGCGGCcagggaGGCGaAUGGCu -3'
miRNA:   3'- uCAGGG----UCAaaCCGCCG------CCGC-UACUG- -5'
13288 5' -57.2 NC_003409.1 + 54571 0.68 0.730378
Target:  5'- cGGUCUccugCAGgUUGGCGGCaaGGCGcucccuGUGACg -3'
miRNA:   3'- -UCAGG----GUCaAACCGCCG--CCGC------UACUG- -5'
13288 5' -57.2 NC_003409.1 + 53127 0.68 0.720465
Target:  5'- -cUCCCAGguggUGcGCcGCGGCGAccUGACc -3'
miRNA:   3'- ucAGGGUCaa--AC-CGcCGCCGCU--ACUG- -5'
13288 5' -57.2 NC_003409.1 + 52593 0.69 0.659703
Target:  5'- cGUCCauccagCAGgcgUGGCGGCcaaggGGCGggGACg -3'
miRNA:   3'- uCAGG------GUCaa-ACCGCCG-----CCGCuaCUG- -5'
13288 5' -57.2 NC_003409.1 + 115465 0.69 0.639177
Target:  5'- -uUCCCAGUauuuuUUcGGCGGCGGUGGUc-- -3'
miRNA:   3'- ucAGGGUCA-----AA-CCGCCGCCGCUAcug -5'
13288 5' -57.2 NC_003409.1 + 10119 0.71 0.567563
Target:  5'- uGGUCaugggggaugCGGag-GGgGGCGGCGAUGACg -3'
miRNA:   3'- -UCAGg---------GUCaaaCCgCCGCCGCUACUG- -5'
13288 5' -57.2 NC_003409.1 + 68269 0.71 0.537417
Target:  5'- uAGaUCCAGaggGGUugcuGGCGGCGAUGGCg -3'
miRNA:   3'- -UCaGGGUCaaaCCG----CCGCCGCUACUG- -5'
13288 5' -57.2 NC_003409.1 + 46198 0.72 0.517629
Target:  5'- uGUCUgUAGUUaUGGCGGCcacgugggccggGGCGAUGACu -3'
miRNA:   3'- uCAGG-GUCAA-ACCGCCG------------CCGCUACUG- -5'
13288 5' -57.2 NC_003409.1 + 33384 1.09 0.001846
Target:  5'- aAGUCCCAGUUUGGCGGCGGCGAUGACu -3'
miRNA:   3'- -UCAGGGUCAAACCGCCGCCGCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.