miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 3' -56 NC_003409.1 + 132946 0.76 0.372424
Target:  5'- -cGGCAUCCGGACCgGCCGCggGAuCCg -3'
miRNA:   3'- ucCCGUGGGUUUGG-CGGCGaaCUuGG- -5'
13289 3' -56 NC_003409.1 + 113357 0.67 0.841197
Target:  5'- uGGGCG-CCAAGCaGCUGCUgc-GCCg -3'
miRNA:   3'- uCCCGUgGGUUUGgCGGCGAacuUGG- -5'
13289 3' -56 NC_003409.1 + 87567 0.66 0.863352
Target:  5'- gAGGuGCACCCuggcugaacucACCGacaaauguucCCGCUUGGGCg -3'
miRNA:   3'- -UCC-CGUGGGuu---------UGGC----------GGCGAACUUGg -5'
13289 3' -56 NC_003409.1 + 45392 0.66 0.900655
Target:  5'- --cGuCACCCAGGCCGCuCGCgugaucacaaagcgGGACCc -3'
miRNA:   3'- uccC-GUGGGUUUGGCG-GCGaa------------CUUGG- -5'
13289 3' -56 NC_003409.1 + 133102 0.7 0.660487
Target:  5'- uAGGGC-CCUuGGCaaGCCGCU-GGACCa -3'
miRNA:   3'- -UCCCGuGGGuUUGg-CGGCGAaCUUGG- -5'
13289 3' -56 NC_003409.1 + 109147 0.7 0.670756
Target:  5'- aGGGGCGUggAGGCUGCCGCUUGuuuCCu -3'
miRNA:   3'- -UCCCGUGggUUUGGCGGCGAACuu-GG- -5'
13289 3' -56 NC_003409.1 + 14971 0.69 0.721438
Target:  5'- cGaGGCACCCcuACCGUCGCgcGAgacGCUg -3'
miRNA:   3'- uC-CCGUGGGuuUGGCGGCGaaCU---UGG- -5'
13289 3' -56 NC_003409.1 + 23204 0.69 0.731378
Target:  5'- cGGGGuCACCUccaggucaCGCCGCUaggugGGACCg -3'
miRNA:   3'- -UCCC-GUGGGuuug----GCGGCGAa----CUUGG- -5'
13289 3' -56 NC_003409.1 + 95057 0.68 0.788857
Target:  5'- uGGcGGCGCCUGAuacACCGCCGUUgcgGuGGCUa -3'
miRNA:   3'- -UC-CCGUGGGUU---UGGCGGCGAa--C-UUGG- -5'
13289 3' -56 NC_003409.1 + 56971 0.67 0.840377
Target:  5'- cAGGGUggugaugACUCAGAuccuguCCGCUGUgUGGACCa -3'
miRNA:   3'- -UCCCG-------UGGGUUU------GGCGGCGaACUUGG- -5'
13289 3' -56 NC_003409.1 + 86866 0.67 0.824438
Target:  5'- cGGGCACacaCAcucCCGCCGCUccAGCUc -3'
miRNA:   3'- uCCCGUGg--GUuu-GGCGGCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 109679 0.68 0.770172
Target:  5'- cGGGGCGCgCGcGCauaGCCGuCUUGGuguggGCCg -3'
miRNA:   3'- -UCCCGUGgGUuUGg--CGGC-GAACU-----UGG- -5'
13289 3' -56 NC_003409.1 + 115802 0.73 0.48867
Target:  5'- cAGaGGCACCCAAGgCGCUGCa--GACCc -3'
miRNA:   3'- -UC-CCGUGGGUUUgGCGGCGaacUUGG- -5'
13289 3' -56 NC_003409.1 + 121395 0.67 0.824438
Target:  5'- cGGGCGgU----UCGUCGCUUGGACCu -3'
miRNA:   3'- uCCCGUgGguuuGGCGGCGAACUUGG- -5'
13289 3' -56 NC_003409.1 + 27937 0.73 0.48867
Target:  5'- cAGGGguCCCuccaguGCaCGCCGCUaggugGGACCg -3'
miRNA:   3'- -UCCCguGGGuu----UG-GCGGCGAa----CUUGG- -5'
13289 3' -56 NC_003409.1 + 69294 0.69 0.760637
Target:  5'- uAGGGUGCCCcuaaAGACCGuCUGUUgcAACCa -3'
miRNA:   3'- -UCCCGUGGG----UUUGGC-GGCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 29939 0.67 0.827849
Target:  5'- uGGGCGCUUGGugacacauuugccccACCGUCGCcugcccgGAACCa -3'
miRNA:   3'- uCCCGUGGGUU---------------UGGCGGCGaa-----CUUGG- -5'
13289 3' -56 NC_003409.1 + 72215 0.67 0.857185
Target:  5'- cAGGGaauaAgCCAAauucGCCcuaGCCGCggGAACCa -3'
miRNA:   3'- -UCCCg---UgGGUU----UGG---CGGCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 42933 0.71 0.598684
Target:  5'- uGGagacCGCCCucGCCGCCGCUUGcgucaauACCg -3'
miRNA:   3'- uCCc---GUGGGuuUGGCGGCGAACu------UGG- -5'
13289 3' -56 NC_003409.1 + 116076 0.7 0.670756
Target:  5'- cAGGGCAUCCGcGGCCGCCGgacagcucCUcGAuGCCa -3'
miRNA:   3'- -UCCCGUGGGU-UUGGCGGC--------GAaCU-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.