miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 3' -56 NC_003409.1 + 88285 0.66 0.864113
Target:  5'- uAGGGUACCUAAAguauuucCCGCCGac---ACCa -3'
miRNA:   3'- -UCCCGUGGGUUU-------GGCGGCgaacuUGG- -5'
13289 3' -56 NC_003409.1 + 87567 0.66 0.863352
Target:  5'- gAGGuGCACCCuggcugaacucACCGacaaauguucCCGCUUGGGCg -3'
miRNA:   3'- -UCC-CGUGGGuu---------UGGC----------GGCGAACUUGg -5'
13289 3' -56 NC_003409.1 + 72215 0.67 0.857185
Target:  5'- cAGGGaauaAgCCAAauucGCCcuaGCCGCggGAACCa -3'
miRNA:   3'- -UCCCg---UgGGUU----UGG---CGGCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 128200 0.67 0.857185
Target:  5'- cGGGCACCCccAACCG-CGCcaagGAgggcuaGCCa -3'
miRNA:   3'- uCCCGUGGGu-UUGGCgGCGaa--CU------UGG- -5'
13289 3' -56 NC_003409.1 + 133934 0.67 0.849291
Target:  5'- gAGGGUcCCCAGcCCGUgGCUa-GGCCa -3'
miRNA:   3'- -UCCCGuGGGUUuGGCGgCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 87599 0.67 0.849291
Target:  5'- cGGGCuCCuCAGGgUGCUGCgagUGAGCg -3'
miRNA:   3'- uCCCGuGG-GUUUgGCGGCGa--ACUUGg -5'
13289 3' -56 NC_003409.1 + 118553 0.67 0.846077
Target:  5'- cGGcGCACCCAGGaacCCGgCGCggcgcaccccagGAACCc -3'
miRNA:   3'- uCC-CGUGGGUUU---GGCgGCGaa----------CUUGG- -5'
13289 3' -56 NC_003409.1 + 113357 0.67 0.841197
Target:  5'- uGGGCG-CCAAGCaGCUGCUgc-GCCg -3'
miRNA:   3'- uCCCGUgGGUUUGgCGGCGAacuUGG- -5'
13289 3' -56 NC_003409.1 + 108369 0.67 0.841197
Target:  5'- cGGGCGCCCcgAGAUCGCacugggugccUGCUguaaGAGCUg -3'
miRNA:   3'- uCCCGUGGG--UUUGGCG----------GCGAa---CUUGG- -5'
13289 3' -56 NC_003409.1 + 56971 0.67 0.840377
Target:  5'- cAGGGUggugaugACUCAGAuccuguCCGCUGUgUGGACCa -3'
miRNA:   3'- -UCCCG-------UGGGUUU------GGCGGCGaACUUGG- -5'
13289 3' -56 NC_003409.1 + 15989 0.67 0.832071
Target:  5'- cGGGCucgccgcGCCCGAGCUGUCGUUUacuACUg -3'
miRNA:   3'- uCCCG-------UGGGUUUGGCGGCGAAcu-UGG- -5'
13289 3' -56 NC_003409.1 + 29939 0.67 0.827849
Target:  5'- uGGGCGCUUGGugacacauuugccccACCGUCGCcugcccgGAACCa -3'
miRNA:   3'- uCCCGUGGGUU---------------UGGCGGCGaa-----CUUGG- -5'
13289 3' -56 NC_003409.1 + 119034 0.67 0.824438
Target:  5'- aGGGGC-CCCGcccACCGCCaCUccAGCCg -3'
miRNA:   3'- -UCCCGuGGGUu--UGGCGGcGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 88086 0.67 0.824438
Target:  5'- cGGGCacggcgccGCCCAAGCCGCaGCacGAaacacggcuuGCCg -3'
miRNA:   3'- uCCCG--------UGGGUUUGGCGgCGaaCU----------UGG- -5'
13289 3' -56 NC_003409.1 + 121395 0.67 0.824438
Target:  5'- cGGGCGgU----UCGUCGCUUGGACCu -3'
miRNA:   3'- uCCCGUgGguuuGGCGGCGAACUUGG- -5'
13289 3' -56 NC_003409.1 + 79231 0.67 0.824438
Target:  5'- gGGGGagGCCCAAaucuaucucuuGCCGCCaGCgcucUGGACa -3'
miRNA:   3'- -UCCCg-UGGGUU-----------UGGCGG-CGa---ACUUGg -5'
13289 3' -56 NC_003409.1 + 86866 0.67 0.824438
Target:  5'- cGGGCACacaCAcucCCGCCGCUccAGCUc -3'
miRNA:   3'- uCCCGUGg--GUuu-GGCGGCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 55440 0.68 0.815788
Target:  5'- cGGGCGgC-AAGCCGCCGCccaUGucCCg -3'
miRNA:   3'- uCCCGUgGgUUUGGCGGCGa--ACuuGG- -5'
13289 3' -56 NC_003409.1 + 96425 0.68 0.797989
Target:  5'- cGGGgGCCC-AACCGCaguuCGUcaGGACCa -3'
miRNA:   3'- uCCCgUGGGuUUGGCG----GCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 105552 0.68 0.788857
Target:  5'- cAGGGUGCCCAgcgauuccuGACUGgCGCUggcauACCu -3'
miRNA:   3'- -UCCCGUGGGU---------UUGGCgGCGAacu--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.