miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 5' -54.6 NC_003409.1 + 33769 1.14 0.001806
Target:  5'- uGGGACCCAAAUUUCAGCCCGGUGCCCu -3'
miRNA:   3'- -CCCUGGGUUUAAAGUCGGGCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 55471 0.75 0.501364
Target:  5'- aGGGACCCAGuAUauaacaggcaaugUUCAGaCCCaaaGGUGUCCa -3'
miRNA:   3'- -CCCUGGGUU-UA-------------AAGUC-GGG---CCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 111513 0.74 0.572366
Target:  5'- cGGGAUCCuGAUUUCgcgGGCUaCGGUGCgCCu -3'
miRNA:   3'- -CCCUGGGuUUAAAG---UCGG-GCCACG-GG- -5'
13289 5' -54.6 NC_003409.1 + 103988 0.73 0.592854
Target:  5'- uGGGACaaaaCGGAgUUCGucGUCCGGUGCCUc -3'
miRNA:   3'- -CCCUGg---GUUUaAAGU--CGGGCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 19816 0.71 0.716013
Target:  5'- gGGGACCCcGGUU---GCCUGGacgcgUGCCCu -3'
miRNA:   3'- -CCCUGGGuUUAAaguCGGGCC-----ACGGG- -5'
13289 5' -54.6 NC_003409.1 + 78274 0.7 0.761283
Target:  5'- cGGGGCagCCGuggcuggcgCAGCCCGGUaGCCg -3'
miRNA:   3'- -CCCUG--GGUuuaaa----GUCGGGCCA-CGGg -5'
13289 5' -54.6 NC_003409.1 + 100065 0.69 0.80229
Target:  5'- cGGGGCggcuguggcaCCAAAUUauggaGGCuaGGUGCCCa -3'
miRNA:   3'- -CCCUG----------GGUUUAAag---UCGggCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 3679 0.69 0.808553
Target:  5'- aGGGAUUCAAGgagagacuguacggCGGCaaaCUGGUGCCCg -3'
miRNA:   3'- -CCCUGGGUUUaaa-----------GUCG---GGCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 132638 0.69 0.810328
Target:  5'- uGGGACCCcuggacauaccGGUUUCAGacuaccaCCUGGUGCUg -3'
miRNA:   3'- -CCCUGGGu----------UUAAAGUC-------GGGCCACGGg -5'
13289 5' -54.6 NC_003409.1 + 33636 0.69 0.828554
Target:  5'- aGGGAUaCCAGGUUcaagCGGCgguuUgGGUGCCCu -3'
miRNA:   3'- -CCCUG-GGUUUAAa---GUCG----GgCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 95824 0.69 0.83529
Target:  5'- uGGaGugCCAAA--UCAGCCCGGggguaaaccaaCCCg -3'
miRNA:   3'- -CC-CugGGUUUaaAGUCGGGCCac---------GGG- -5'
13289 5' -54.6 NC_003409.1 + 83773 0.69 0.836955
Target:  5'- uGGGugCCAccuGGUggCGGUCUGGUGUUg -3'
miRNA:   3'- -CCCugGGU---UUAaaGUCGGGCCACGGg -5'
13289 5' -54.6 NC_003409.1 + 85028 0.69 0.845167
Target:  5'- cGGAgCCAGAUguu--CCCGGUGaCCCu -3'
miRNA:   3'- cCCUgGGUUUAaagucGGGCCAC-GGG- -5'
13289 5' -54.6 NC_003409.1 + 83556 0.68 0.86859
Target:  5'- -cGACCCcauug-CGGCCCGGguUGCCg -3'
miRNA:   3'- ccCUGGGuuuaaaGUCGGGCC--ACGGg -5'
13289 5' -54.6 NC_003409.1 + 100686 0.68 0.875973
Target:  5'- aGGGAgUUggGUU--GGCCCGGgacgaGCCCc -3'
miRNA:   3'- -CCCUgGGuuUAAagUCGGGCCa----CGGG- -5'
13289 5' -54.6 NC_003409.1 + 133443 0.68 0.875973
Target:  5'- cGGGGuCCCAGGgccggUUCGGUggcauacaggCCGGUgaggGCCCc -3'
miRNA:   3'- -CCCU-GGGUUUa----AAGUCG----------GGCCA----CGGG- -5'
13289 5' -54.6 NC_003409.1 + 18940 0.68 0.88172
Target:  5'- cGGGGCCaucuuggUC-GCCUGGacUGCCCc -3'
miRNA:   3'- -CCCUGGguuuaa-AGuCGGGCC--ACGGG- -5'
13289 5' -54.6 NC_003409.1 + 28614 0.67 0.89677
Target:  5'- aGGGGCCagcuuGAGUcagUUUAGCaCUGGgacUGCCCa -3'
miRNA:   3'- -CCCUGGg----UUUA---AAGUCG-GGCC---ACGGG- -5'
13289 5' -54.6 NC_003409.1 + 121348 0.67 0.89677
Target:  5'- -uGACCUAGGUagUC--CCUGGUGCCCu -3'
miRNA:   3'- ccCUGGGUUUAa-AGucGGGCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 73557 0.67 0.903237
Target:  5'- aGGGGCCguGAUUaCuGCgacaaCGGUGCCg -3'
miRNA:   3'- -CCCUGGguUUAAaGuCGg----GCCACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.