Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13289 | 5' | -54.6 | NC_003409.1 | + | 3679 | 0.69 | 0.808553 |
Target: 5'- aGGGAUUCAAGgagagacuguacggCGGCaaaCUGGUGCCCg -3' miRNA: 3'- -CCCUGGGUUUaaa-----------GUCG---GGCCACGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 18940 | 0.68 | 0.88172 |
Target: 5'- cGGGGCCaucuuggUC-GCCUGGacUGCCCc -3' miRNA: 3'- -CCCUGGguuuaa-AGuCGGGCC--ACGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 18972 | 0.67 | 0.90824 |
Target: 5'- cGGGGCCauuuuggUC-GCCUGGagcUGCCCc -3' miRNA: 3'- -CCCUGGguuuaa-AGuCGGGCC---ACGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 19816 | 0.71 | 0.716013 |
Target: 5'- gGGGACCCcGGUU---GCCUGGacgcgUGCCCu -3' miRNA: 3'- -CCCUGGGuUUAAaguCGGGCC-----ACGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 21087 | 0.66 | 0.941751 |
Target: 5'- -aGAUCCuggAAGUUUgugaAGCCCuGUGCCCg -3' miRNA: 3'- ccCUGGG---UUUAAAg---UCGGGcCACGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 28614 | 0.67 | 0.89677 |
Target: 5'- aGGGGCCagcuuGAGUcagUUUAGCaCUGGgacUGCCCa -3' miRNA: 3'- -CCCUGGg----UUUA---AAGUCG-GGCC---ACGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 33636 | 0.69 | 0.828554 |
Target: 5'- aGGGAUaCCAGGUUcaagCGGCgguuUgGGUGCCCu -3' miRNA: 3'- -CCCUG-GGUUUAAa---GUCG----GgCCACGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 33769 | 1.14 | 0.001806 |
Target: 5'- uGGGACCCAAAUUUCAGCCCGGUGCCCu -3' miRNA: 3'- -CCCUGGGUUUAAAGUCGGGCCACGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 48616 | 0.67 | 0.910076 |
Target: 5'- cGGGACUUAccuagcUCGGCCUGGaaacugugaccccugGCCCa -3' miRNA: 3'- -CCCUGGGUuuaa--AGUCGGGCCa--------------CGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 50960 | 0.66 | 0.941751 |
Target: 5'- aGGGACUCGccacacucuucAUUUC-GCaCCGGUGUCUa -3' miRNA: 3'- -CCCUGGGUu----------UAAAGuCG-GGCCACGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 55162 | 0.66 | 0.946284 |
Target: 5'- cGGuuACCCG------GGCCCGGUGCUa -3' miRNA: 3'- cCC--UGGGUuuaaagUCGGGCCACGGg -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 55331 | 0.66 | 0.946284 |
Target: 5'- -uGACCUGGAag-UAGCaCCGG-GCCCg -3' miRNA: 3'- ccCUGGGUUUaaaGUCG-GGCCaCGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 55471 | 0.75 | 0.501364 |
Target: 5'- aGGGACCCAGuAUauaacaggcaaugUUCAGaCCCaaaGGUGUCCa -3' miRNA: 3'- -CCCUGGGUU-UA-------------AAGUC-GGG---CCACGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 56035 | 0.66 | 0.946284 |
Target: 5'- aGGcuACCCGGAUUUCAGagagacCCUGGgcGUCCa -3' miRNA: 3'- cCC--UGGGUUUAAAGUC------GGGCCa-CGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 63966 | 0.67 | 0.921201 |
Target: 5'- aGGGGCUCAGGc----GCCaGGUGUCCa -3' miRNA: 3'- -CCCUGGGUUUaaaguCGGgCCACGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 73557 | 0.67 | 0.903237 |
Target: 5'- aGGGGCCguGAUUaCuGCgacaaCGGUGCCg -3' miRNA: 3'- -CCCUGGguUUAAaGuCGg----GCCACGGg -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 77438 | 0.67 | 0.921201 |
Target: 5'- uGGGACCgGGcgaa-GGCCUGGcgcugaGCCCa -3' miRNA: 3'- -CCCUGGgUUuaaagUCGGGCCa-----CGGG- -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 78274 | 0.7 | 0.761283 |
Target: 5'- cGGGGCagCCGuggcuggcgCAGCCCGGUaGCCg -3' miRNA: 3'- -CCCUG--GGUuuaaa----GUCGGGCCA-CGGg -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 83556 | 0.68 | 0.86859 |
Target: 5'- -cGACCCcauug-CGGCCCGGguUGCCg -3' miRNA: 3'- ccCUGGGuuuaaaGUCGGGCC--ACGGg -5' |
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13289 | 5' | -54.6 | NC_003409.1 | + | 83773 | 0.69 | 0.836955 |
Target: 5'- uGGGugCCAccuGGUggCGGUCUGGUGUUg -3' miRNA: 3'- -CCCugGGU---UUAaaGUCGGGCCACGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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