miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13290 3' -53.9 NC_003409.1 + 34212 1.08 0.004421
Target:  5'- uACUCCCGAUGACCUGUUAGCAGACCUg -3'
miRNA:   3'- -UGAGGGCUACUGGACAAUCGUCUGGA- -5'
13290 3' -53.9 NC_003409.1 + 131101 0.7 0.798976
Target:  5'- aGCUgCUGGUGGcCCUGggugUAGUGGGCCg -3'
miRNA:   3'- -UGAgGGCUACU-GGACa---AUCGUCUGGa -5'
13290 3' -53.9 NC_003409.1 + 74642 0.68 0.88892
Target:  5'- gACUCC---UGACCUcGUUAGCGGGCg- -3'
miRNA:   3'- -UGAGGgcuACUGGA-CAAUCGUCUGga -5'
13290 3' -53.9 NC_003409.1 + 55353 0.67 0.91125
Target:  5'- -aUCCCGuuugggagcguacauGUGACCUGgaAGUAGcACCg -3'
miRNA:   3'- ugAGGGC---------------UACUGGACaaUCGUC-UGGa -5'
13290 3' -53.9 NC_003409.1 + 42832 0.67 0.914894
Target:  5'- cCUCCCuGAcGACgaGUccGCAGACCa -3'
miRNA:   3'- uGAGGG-CUaCUGgaCAauCGUCUGGa -5'
13290 3' -53.9 NC_003409.1 + 111065 0.66 0.931226
Target:  5'- gGCUUCCGugggucaAUGACCgc--GGCGGGCCg -3'
miRNA:   3'- -UGAGGGC-------UACUGGacaaUCGUCUGGa -5'
13290 3' -53.9 NC_003409.1 + 37344 0.66 0.946342
Target:  5'- uCUCCCauuGAUGAgCUGcgUGGCGGAgCg -3'
miRNA:   3'- uGAGGG---CUACUgGACa-AUCGUCUgGa -5'
13290 3' -53.9 NC_003409.1 + 108312 0.66 0.950708
Target:  5'- -gUCUCGAgggacUGuCCUGgcucgAGCAGACCa -3'
miRNA:   3'- ugAGGGCU-----ACuGGACaa---UCGUCUGGa -5'
13290 3' -53.9 NC_003409.1 + 84167 0.66 0.950708
Target:  5'- aGCUCCCGcuUGGCUaucucGCAGGCCa -3'
miRNA:   3'- -UGAGGGCu-ACUGGacaauCGUCUGGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.