miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13290 5' -47.7 NC_003409.1 + 119269 0.66 0.998608
Target:  5'- -aGGGgCUGC-GAUgACUCAGCUGc- -3'
miRNA:   3'- gaUCUgGACGaUUAgUGAGUCGAUuu -5'
13290 5' -47.7 NC_003409.1 + 107947 0.66 0.998608
Target:  5'- --uGGCCUGCUGcaaAUCGC-CGGaCUGGAg -3'
miRNA:   3'- gauCUGGACGAU---UAGUGaGUC-GAUUU- -5'
13290 5' -47.7 NC_003409.1 + 113338 0.67 0.997703
Target:  5'- --uGACCUGCUGuucgaagcccccaccGUCGCUacccuGGCUAAGg -3'
miRNA:   3'- gauCUGGACGAU---------------UAGUGAg----UCGAUUU- -5'
13290 5' -47.7 NC_003409.1 + 91772 0.69 0.988046
Target:  5'- cCUAGGCg-GUUGGgauUCACUCAGCUGc- -3'
miRNA:   3'- -GAUCUGgaCGAUU---AGUGAGUCGAUuu -5'
13290 5' -47.7 NC_003409.1 + 23742 0.69 0.986348
Target:  5'- aUAGGgCUGC-GAUgACUCAGCUGc- -3'
miRNA:   3'- gAUCUgGACGaUUAgUGAGUCGAUuu -5'
13290 5' -47.7 NC_003409.1 + 21936 0.7 0.980139
Target:  5'- -gGGcauCCUGCUcGUCGCUguGCUGAc -3'
miRNA:   3'- gaUCu--GGACGAuUAGUGAguCGAUUu -5'
13290 5' -47.7 NC_003409.1 + 35210 0.7 0.980139
Target:  5'- -aAGACUUGUcugAGUCAC-CAGCUGAu -3'
miRNA:   3'- gaUCUGGACGa--UUAGUGaGUCGAUUu -5'
13290 5' -47.7 NC_003409.1 + 8844 0.71 0.965454
Target:  5'- uCUAGACCUGggAGUCauugugguuGCUCAGUUGc- -3'
miRNA:   3'- -GAUCUGGACgaUUAG---------UGAGUCGAUuu -5'
13290 5' -47.7 NC_003409.1 + 34176 1.07 0.016179
Target:  5'- gCUAGACCUGCUAAUCACUCAGCUAAAa -3'
miRNA:   3'- -GAUCUGGACGAUUAGUGAGUCGAUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.