Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13291 | 3' | -52.5 | NC_003409.1 | + | 131110 | 0.76 | 0.492427 |
Target: 5'- uGGGCUUCCAGCuGCugGUGGcccuGGGUg -3' miRNA: 3'- -UCCGAAGGUCGuCGugCGUUuu--CUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 132468 | 0.67 | 0.930664 |
Target: 5'- -uGCUUCCAGU-GCcaGCGUGGAGGGGUc -3' miRNA: 3'- ucCGAAGGUCGuCG--UGCGUUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 133268 | 0.68 | 0.900423 |
Target: 5'- -aGCUggUCCAGCGGCuuGCc-AAGGGCc -3' miRNA: 3'- ucCGA--AGGUCGUCGugCGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 133710 | 0.67 | 0.930664 |
Target: 5'- -cGUccaCAGCAGCGUGCAGAGGGGUa -3' miRNA: 3'- ucCGaagGUCGUCGUGCGUUUUCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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