Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13291 | 3' | -52.5 | NC_003409.1 | + | 50063 | 0.67 | 0.935927 |
Target: 5'- gAGGCgUCCGGUA-CugGCGu--GGGCg -3' miRNA: 3'- -UCCGaAGGUCGUcGugCGUuuuCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 47132 | 0.67 | 0.936439 |
Target: 5'- uGGCaaucUCCgagcGGCAGUACGCucccuauuuuugacuGAAGGGCg -3' miRNA: 3'- uCCGa---AGG----UCGUCGUGCGu--------------UUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 46846 | 0.66 | 0.954386 |
Target: 5'- uAGGCcUCCuGCAGCAUaugGCAA---GGCu -3' miRNA: 3'- -UCCGaAGGuCGUCGUG---CGUUuucUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 43639 | 0.66 | 0.958367 |
Target: 5'- cGGUaUCCucgcacaccgcGGcCAGCAUGUcgGAGAGCa -3' miRNA: 3'- uCCGaAGG-----------UC-GUCGUGCGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 38804 | 0.7 | 0.839103 |
Target: 5'- uGGCaa-CGGCAGUcCGCGucAGAGCg -3' miRNA: 3'- uCCGaagGUCGUCGuGCGUuuUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 35445 | 1.13 | 0.00244 |
Target: 5'- cAGGCUUCCAGCAGCACGCAAAAGAGCa -3' miRNA: 3'- -UCCGAAGGUCGUCGUGCGUUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 33942 | 0.71 | 0.764717 |
Target: 5'- gAGGCg-CCAGCgaGGCGCGCuccuGGGGGUu -3' miRNA: 3'- -UCCGaaGGUCG--UCGUGCGuu--UUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 33028 | 0.72 | 0.75473 |
Target: 5'- gAGGCaguagCCcgccgcaaggAGCAGCcUGCAGGGGAGCa -3' miRNA: 3'- -UCCGaa---GG----------UCGUCGuGCGUUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 27421 | 0.73 | 0.649 |
Target: 5'- cGGgUUCCAGCAGCAcccacCGCccguccaaauucuAAAAGAGUg -3' miRNA: 3'- uCCgAAGGUCGUCGU-----GCG-------------UUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 27182 | 0.73 | 0.650071 |
Target: 5'- uAGGCcaUUCUAGgAGaCGCGCAAAGGGGg -3' miRNA: 3'- -UCCG--AAGGUCgUC-GUGCGUUUUCUCg -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24540 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24500 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24460 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24420 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24380 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24340 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24300 | 0.67 | 0.935927 |
Target: 5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24260 | 0.67 | 0.930664 |
Target: 5'- gAGGagccCCGGCAGCAC-CccAGGAGCc -3' miRNA: 3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24214 | 0.7 | 0.830432 |
Target: 5'- gGGGCgcgCCAGCGGUggGC---GGGGCc -3' miRNA: 3'- -UCCGaa-GGUCGUCGugCGuuuUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 18227 | 0.67 | 0.949718 |
Target: 5'- uGGGCUUCUcGCcaacccaAGCGCgGCAuc-GAGCg -3' miRNA: 3'- -UCCGAAGGuCG-------UCGUG-CGUuuuCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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