miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13291 5' -63.4 NC_003409.1 + 110087 0.66 0.601102
Target:  5'- -cGCCagagcguuccugCGCCUGGCCgACCaggcGCuCGCCGGu -3'
miRNA:   3'- ccCGG------------GUGGACCGG-UGGa---UG-GCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 35267 0.66 0.572165
Target:  5'- uGGGCCCgguuACCU-GCUcuuuuGCgUGCUGCUGGa -3'
miRNA:   3'- -CCCGGG----UGGAcCGG-----UGgAUGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 80455 0.66 0.580817
Target:  5'- cGGCCaGCCuguUGGCCACCauuagccaacaggUGCCGCaccugaGGu -3'
miRNA:   3'- cCCGGgUGG---ACCGGUGG-------------AUGGCGg-----CC- -5'
13291 5' -63.4 NC_003409.1 + 128640 0.66 0.552104
Target:  5'- aGGCCC-CUUGGCCcaugACCUucccgcgGCCcagggaacucuuGCCGGg -3'
miRNA:   3'- cCCGGGuGGACCGG----UGGA-------UGG------------CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 41537 0.66 0.601102
Target:  5'- -uGCCCAgaguccgcgcguCCgUGGCCGCgUAUCGuuGGa -3'
miRNA:   3'- ccCGGGU------------GG-ACCGGUGgAUGGCggCC- -5'
13291 5' -63.4 NC_003409.1 + 23196 0.66 0.58178
Target:  5'- cGGGUgCACggGGUCACCUccaggucacGCCGCUaGGu -3'
miRNA:   3'- -CCCGgGUGgaCCGGUGGA---------UGGCGG-CC- -5'
13291 5' -63.4 NC_003409.1 + 113791 0.66 0.601102
Target:  5'- cGGCaCCAcCCUGuGCgGCCgaauCCGCCa- -3'
miRNA:   3'- cCCG-GGU-GGAC-CGgUGGau--GGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 92123 0.66 0.556862
Target:  5'- aGGGuCCCGguacgcgucccuguuUCUgGGCCGCCgGCCGUCGc -3'
miRNA:   3'- -CCC-GGGU---------------GGA-CCGGUGGaUGGCGGCc -5'
13291 5' -63.4 NC_003409.1 + 121553 0.66 0.562588
Target:  5'- aGGUCCAagcgacaaccgcCCgUGGCCACaacGCCGCCuGGu -3'
miRNA:   3'- cCCGGGU------------GG-ACCGGUGga-UGGCGG-CC- -5'
13291 5' -63.4 NC_003409.1 + 42859 0.66 0.58178
Target:  5'- aGGGCCC-CCUacuacuGCCACCgAgCGCCu- -3'
miRNA:   3'- -CCCGGGuGGAc-----CGGUGGaUgGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 119813 0.66 0.58178
Target:  5'- cGGGUgCACggGGUCACCUccaggucacGCCGCUaGGu -3'
miRNA:   3'- -CCCGgGUGgaCCGGUGGA---------UGGCGG-CC- -5'
13291 5' -63.4 NC_003409.1 + 88094 0.66 0.601102
Target:  5'- aGGCCUACCgGGCaCGgC-GCCGCCc- -3'
miRNA:   3'- cCCGGGUGGaCCG-GUgGaUGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 55188 0.66 0.591428
Target:  5'- gGGGUCaCACa-GGCCAUCUACaGCCu- -3'
miRNA:   3'- -CCCGG-GUGgaCCGGUGGAUGgCGGcc -5'
13291 5' -63.4 NC_003409.1 + 54955 0.66 0.591428
Target:  5'- aGGCCgGCC-GGCCACUgcagauUgGCUGGa -3'
miRNA:   3'- cCCGGgUGGaCCGGUGGau----GgCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 113608 0.67 0.53414
Target:  5'- aGGCaCCugUUGGaCCGCCcgUCGCUGGc -3'
miRNA:   3'- cCCG-GGugGACC-GGUGGauGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 111194 0.67 0.531322
Target:  5'- cGGGCCgCACCcgucauucgaguaaUGGCgccCACgCaACCGUCGGg -3'
miRNA:   3'- -CCCGG-GUGG--------------ACCG---GUG-GaUGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 117839 0.67 0.540736
Target:  5'- cGGGgCCACgCUGGCCACucggggggacaacaCUaAUCGCCa- -3'
miRNA:   3'- -CCCgGGUG-GACCGGUG--------------GA-UGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 113025 0.67 0.506218
Target:  5'- aGGCCUcCCggaGGCCgguAUCUGCCGCCc- -3'
miRNA:   3'- cCCGGGuGGa--CCGG---UGGAUGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 102013 0.67 0.54357
Target:  5'- aGGCCCGCCUGGaauCCUuuuugaGCCGa -3'
miRNA:   3'- cCCGGGUGGACCgguGGAugg---CGGCc -5'
13291 5' -63.4 NC_003409.1 + 40697 0.67 0.5332
Target:  5'- uGGCgCCACCgaacGGCCGCgUccaacgagcagacACCGCCa- -3'
miRNA:   3'- cCCG-GGUGGa---CCGGUGgA-------------UGGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.