miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13291 5' -63.4 NC_003409.1 + 18940 0.71 0.292328
Target:  5'- cGGGgCCAUCuUGGUCGCCUGgacugcccCCGCgGGg -3'
miRNA:   3'- -CCCgGGUGG-ACCGGUGGAU--------GGCGgCC- -5'
13291 5' -63.4 NC_003409.1 + 23196 0.66 0.58178
Target:  5'- cGGGUgCACggGGUCACCUccaggucacGCCGCUaGGu -3'
miRNA:   3'- -CCCGgGUGgaCCGGUGGA---------UGGCGG-CC- -5'
13291 5' -63.4 NC_003409.1 + 23799 0.68 0.443736
Target:  5'- uGGGuucaCCCACCUGGguaUACCUACUggauuacccaGCUGGg -3'
miRNA:   3'- -CCC----GGGUGGACCg--GUGGAUGG----------CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 24736 0.72 0.279621
Target:  5'- gGGGCgCGCCggGGCU-CCUgggguGCUGCCGGg -3'
miRNA:   3'- -CCCGgGUGGa-CCGGuGGA-----UGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 35267 0.66 0.572165
Target:  5'- uGGGCCCgguuACCU-GCUcuuuuGCgUGCUGCUGGa -3'
miRNA:   3'- -CCCGGG----UGGAcCGG-----UGgAUGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 35411 1.11 0.000493
Target:  5'- cGGGCCCACCUGGCCACCUACCGCCGGc -3'
miRNA:   3'- -CCCGGGUGGACCGGUGGAUGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 40363 0.82 0.061755
Target:  5'- --uCCCACCaUGGCCGCC-ACCGCCGGa -3'
miRNA:   3'- cccGGGUGG-ACCGGUGGaUGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 40697 0.67 0.5332
Target:  5'- uGGCgCCACCgaacGGCCGCgUccaacgagcagacACCGCCa- -3'
miRNA:   3'- cCCG-GGUGGa---CCGGUGgA-------------UGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 41537 0.66 0.601102
Target:  5'- -uGCCCAgaguccgcgcguCCgUGGCCGCgUAUCGuuGGa -3'
miRNA:   3'- ccCGGGU------------GG-ACCGGUGgAUGGCggCC- -5'
13291 5' -63.4 NC_003409.1 + 42859 0.66 0.58178
Target:  5'- aGGGCCC-CCUacuacuGCCACCgAgCGCCu- -3'
miRNA:   3'- -CCCGGGuGGAc-----CGGUGGaUgGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 43697 0.69 0.385828
Target:  5'- cGGa-CGCC-GGCCACCUGCUGCCc- -3'
miRNA:   3'- cCCggGUGGaCCGGUGGAUGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 46032 0.68 0.470008
Target:  5'- cGGCCCACgUGGCCGCCauaacUACaGacaUGGg -3'
miRNA:   3'- cCCGGGUGgACCGGUGG-----AUGgCg--GCC- -5'
13291 5' -63.4 NC_003409.1 + 52424 0.71 0.305482
Target:  5'- -cGCCC-CUUGGCCGCCacGCCuGCUGGa -3'
miRNA:   3'- ccCGGGuGGACCGGUGGa-UGG-CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 54955 0.66 0.591428
Target:  5'- aGGCCgGCC-GGCCACUgcagauUgGCUGGa -3'
miRNA:   3'- cCCGGgUGGaCCGGUGGau----GgCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 55188 0.66 0.591428
Target:  5'- gGGGUCaCACa-GGCCAUCUACaGCCu- -3'
miRNA:   3'- -CCCGG-GUGgaCCGGUGGAUGgCGGcc -5'
13291 5' -63.4 NC_003409.1 + 67977 0.69 0.393792
Target:  5'- aGGGCCCuCgUGGCgcccCCUGCgCGCCGc -3'
miRNA:   3'- -CCCGGGuGgACCGgu--GGAUG-GCGGCc -5'
13291 5' -63.4 NC_003409.1 + 68096 0.7 0.347638
Target:  5'- uGGGCCCGUCUGGCCAgagGCC-UCGGg -3'
miRNA:   3'- -CCCGGGUGGACCGGUggaUGGcGGCC- -5'
13291 5' -63.4 NC_003409.1 + 73060 0.69 0.416648
Target:  5'- aGGGCCCucuGCCUuuugguuuuccaaccGGuCUACCUuccgaggauuauggcGCCGCUGGa -3'
miRNA:   3'- -CCCGGG---UGGA---------------CC-GGUGGA---------------UGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 74162 0.68 0.443736
Target:  5'- uGGGUguugUCGCCUcuGCCGCCguaGCCGCCGc -3'
miRNA:   3'- -CCCG----GGUGGAc-CGGUGGa--UGGCGGCc -5'
13291 5' -63.4 NC_003409.1 + 80455 0.66 0.580817
Target:  5'- cGGCCaGCCuguUGGCCACCauuagccaacaggUGCCGCaccugaGGu -3'
miRNA:   3'- cCCGGgUGG---ACCGGUGG-------------AUGGCGg-----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.