miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13291 5' -63.4 NC_003409.1 + 130934 0.73 0.233171
Target:  5'- cGGCCCACUacacccagGGCCACCaGCaGCUGGa -3'
miRNA:   3'- cCCGGGUGGa-------CCGGUGGaUGgCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 117839 0.67 0.540736
Target:  5'- cGGGgCCACgCUGGCCACucggggggacaacaCUaAUCGCCa- -3'
miRNA:   3'- -CCCgGGUG-GACCGGUG--------------GA-UGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 128640 0.66 0.552104
Target:  5'- aGGCCC-CUUGGCCcaugACCUucccgcgGCCcagggaacucuuGCCGGg -3'
miRNA:   3'- cCCGGGuGGACCGG----UGGA-------UGG------------CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 113791 0.66 0.601102
Target:  5'- cGGCaCCAcCCUGuGCgGCCgaauCCGCCa- -3'
miRNA:   3'- cCCG-GGU-GGAC-CGgUGGau--GGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 119768 0.7 0.370224
Target:  5'- aGGGCCauccaCACUuuauguUGGCCGCgUGCCaggcGCCGGc -3'
miRNA:   3'- -CCCGG-----GUGG------ACCGGUGgAUGG----CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 73060 0.69 0.416648
Target:  5'- aGGGCCCucuGCCUuuugguuuuccaaccGGuCUACCUuccgaggauuauggcGCCGCUGGa -3'
miRNA:   3'- -CCCGGG---UGGA---------------CC-GGUGGA---------------UGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 133482 0.68 0.461161
Target:  5'- aGGGCCC-CCUGuGUCugU--CCGCCuGGa -3'
miRNA:   3'- -CCCGGGuGGAC-CGGugGauGGCGG-CC- -5'
13291 5' -63.4 NC_003409.1 + 112786 0.68 0.461161
Target:  5'- -cGCCCGCUUGGCaagg-GCCGCgCGGg -3'
miRNA:   3'- ccCGGGUGGACCGguggaUGGCG-GCC- -5'
13291 5' -63.4 NC_003409.1 + 46032 0.68 0.470008
Target:  5'- cGGCCCACgUGGCCGCCauaacUACaGacaUGGg -3'
miRNA:   3'- cCCGGGUGgACCGGUGG-----AUGgCg--GCC- -5'
13291 5' -63.4 NC_003409.1 + 111194 0.67 0.531322
Target:  5'- cGGGCCgCACCcgucauucgaguaaUGGCgccCACgCaACCGUCGGg -3'
miRNA:   3'- -CCCGG-GUGG--------------ACCG---GUG-GaUGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 108603 0.68 0.47894
Target:  5'- aGGCCgGCCuccuguUGGCCACCauagACacggugGCCGGc -3'
miRNA:   3'- cCCGGgUGG------ACCGGUGGa---UGg-----CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 130757 0.68 0.470008
Target:  5'- uGGGCCCAgCUGGgCAgC-ACCGUCc- -3'
miRNA:   3'- -CCCGGGUgGACCgGUgGaUGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 18940 0.71 0.292328
Target:  5'- cGGGgCCAUCuUGGUCGCCUGgacugcccCCGCgGGg -3'
miRNA:   3'- -CCCgGGUGG-ACCGGUGGAU--------GGCGgCC- -5'
13291 5' -63.4 NC_003409.1 + 118889 0.68 0.47894
Target:  5'- gGGGCCCcuauaauCCUGGCCcccAUCUACUGaaaCGa -3'
miRNA:   3'- -CCCGGGu------GGACCGG---UGGAUGGCg--GCc -5'
13291 5' -63.4 NC_003409.1 + 52424 0.71 0.305482
Target:  5'- -cGCCC-CUUGGCCGCCacGCCuGCUGGa -3'
miRNA:   3'- ccCGGGuGGACCGGUGGa-UGG-CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 84408 0.68 0.470008
Target:  5'- cGGGCguuacaaucUCGCCUGGCaaGCaCUGCC-CCGGg -3'
miRNA:   3'- -CCCG---------GGUGGACCGg-UG-GAUGGcGGCC- -5'
13291 5' -63.4 NC_003409.1 + 113025 0.67 0.506218
Target:  5'- aGGCCUcCCggaGGCCgguAUCUGCCGCCc- -3'
miRNA:   3'- cCCGGGuGGa--CCGG---UGGAUGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 102013 0.67 0.54357
Target:  5'- aGGCCCGCCUGGaauCCUuuuugaGCCGa -3'
miRNA:   3'- cCCGGGUGGACCgguGGAugg---CGGCc -5'
13291 5' -63.4 NC_003409.1 + 68096 0.7 0.347638
Target:  5'- uGGGCCCGUCUGGCCAgagGCC-UCGGg -3'
miRNA:   3'- -CCCGGGUGGACCGGUggaUGGcGGCC- -5'
13291 5' -63.4 NC_003409.1 + 109750 0.68 0.435164
Target:  5'- uGGUCCACCUugcGGCCcCUUACUGCgGa -3'
miRNA:   3'- cCCGGGUGGA---CCGGuGGAUGGCGgCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.