miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13292 3' -55.8 NC_003409.1 + 38618 0.66 0.880684
Target:  5'- uGCGCGCCGa-GGCgCCGCAgucGUCcGCu -3'
miRNA:   3'- -UGCGCGGUcaCCGaGGUGUa--CAGuUG- -5'
13292 3' -55.8 NC_003409.1 + 11815 0.67 0.825004
Target:  5'- cCGUGUaGGUGGuCUCCACgAUGUCGu- -3'
miRNA:   3'- uGCGCGgUCACC-GAGGUG-UACAGUug -5'
13292 3' -55.8 NC_003409.1 + 107650 0.67 0.81626
Target:  5'- cCGCuGCCAG-GGCaUCC-CA-GUCAGCg -3'
miRNA:   3'- uGCG-CGGUCaCCG-AGGuGUaCAGUUG- -5'
13292 3' -55.8 NC_003409.1 + 20199 0.67 0.807341
Target:  5'- uGCGCGUCagcugcagccguAGUGGCUCUAUAUG-CGu- -3'
miRNA:   3'- -UGCGCGG------------UCACCGAGGUGUACaGUug -5'
13292 3' -55.8 NC_003409.1 + 78671 0.68 0.760452
Target:  5'- gACGaCcCCAGccccuUGGUUCCACGaaUGUCAGCg -3'
miRNA:   3'- -UGC-GcGGUC-----ACCGAGGUGU--ACAGUUG- -5'
13292 3' -55.8 NC_003409.1 + 21173 0.7 0.679796
Target:  5'- cCGUGCCAGggGGUUUCGCuucUGUCAAa -3'
miRNA:   3'- uGCGCGGUCa-CCGAGGUGu--ACAGUUg -5'
13292 3' -55.8 NC_003409.1 + 24734 0.72 0.534878
Target:  5'- gGCGCGCCGG-GGCUCCugGgGUg--- -3'
miRNA:   3'- -UGCGCGGUCaCCGAGGugUaCAguug -5'
13292 3' -55.8 NC_003409.1 + 24068 0.72 0.52481
Target:  5'- gGCGCGCCccagaacaugGGUGGCUaacgcCUACAUGggCAGCu -3'
miRNA:   3'- -UGCGCGG----------UCACCGA-----GGUGUACa-GUUG- -5'
13292 3' -55.8 NC_003409.1 + 37289 1.1 0.002032
Target:  5'- aACGCGCCAGUGGCUCCACAUGUCAACg -3'
miRNA:   3'- -UGCGCGGUCACCGAGGUGUACAGUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.