miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13292 5' -58.2 NC_003409.1 + 37255 1.09 0.001259
Target:  5'- aUCGCCAGCAUGCAAGGGCCGCCAAGAa -3'
miRNA:   3'- -AGCGGUCGUACGUUCCCGGCGGUUCU- -5'
13292 5' -58.2 NC_003409.1 + 112785 0.76 0.24315
Target:  5'- gCGCCcGCuugGCAAGGGCCGCgCGGGc -3'
miRNA:   3'- aGCGGuCGua-CGUUCCCGGCG-GUUCu -5'
13292 5' -58.2 NC_003409.1 + 88686 0.74 0.33777
Target:  5'- cUGCCGGCAggcaggggcGCGGGGGCUGCaaaAAGAa -3'
miRNA:   3'- aGCGGUCGUa--------CGUUCCCGGCGg--UUCU- -5'
13292 5' -58.2 NC_003409.1 + 66731 0.73 0.369308
Target:  5'- gUGUCGGCGUGCcAGGGCCaGCCuguugcAGAa -3'
miRNA:   3'- aGCGGUCGUACGuUCCCGG-CGGu-----UCU- -5'
13292 5' -58.2 NC_003409.1 + 47943 0.71 0.456497
Target:  5'- aUCGUUAGCGUGgggaauaccaaCAGGaGGCCGCCAAa- -3'
miRNA:   3'- -AGCGGUCGUAC-----------GUUC-CCGGCGGUUcu -5'
13292 5' -58.2 NC_003409.1 + 132460 0.71 0.465817
Target:  5'- gUGCCAGCGUGgAGGGGUCaggcaaugGCCAugggGGAg -3'
miRNA:   3'- aGCGGUCGUACgUUCCCGG--------CGGU----UCU- -5'
13292 5' -58.2 NC_003409.1 + 80514 0.7 0.543549
Target:  5'- uUCGCUGGCAUGCuAGacguGGCCGCacugCGAGGu -3'
miRNA:   3'- -AGCGGUCGUACGuUC----CCGGCG----GUUCU- -5'
13292 5' -58.2 NC_003409.1 + 67800 0.7 0.553593
Target:  5'- aUCGCggugggugCGGCGcGCAGGGGgCGCCAcGAg -3'
miRNA:   3'- -AGCG--------GUCGUaCGUUCCCgGCGGUuCU- -5'
13292 5' -58.2 NC_003409.1 + 109607 0.69 0.584024
Target:  5'- cCGCCuccGCGUGCGAaGGCUguuucaaaauuGCCGAGAu -3'
miRNA:   3'- aGCGGu--CGUACGUUcCCGG-----------CGGUUCU- -5'
13292 5' -58.2 NC_003409.1 + 131714 0.69 0.594247
Target:  5'- cUUGUCAGagGUGCugcGGGCgGCCAGGGa -3'
miRNA:   3'- -AGCGGUCg-UACGuu-CCCGgCGGUUCU- -5'
13292 5' -58.2 NC_003409.1 + 55829 0.69 0.604498
Target:  5'- gCGCCAGCcgcGCGAccucccacGGGUCGCCGAc- -3'
miRNA:   3'- aGCGGUCGua-CGUU--------CCCGGCGGUUcu -5'
13292 5' -58.2 NC_003409.1 + 24209 0.69 0.604498
Target:  5'- gCGCCAGCGguggGC-GGGGCC-CCAu-- -3'
miRNA:   3'- aGCGGUCGUa---CGuUCCCGGcGGUucu -5'
13292 5' -58.2 NC_003409.1 + 70207 0.69 0.61477
Target:  5'- aUGCCGGgGUGCGcgGGGGUC-CCGAGu -3'
miRNA:   3'- aGCGGUCgUACGU--UCCCGGcGGUUCu -5'
13292 5' -58.2 NC_003409.1 + 133702 0.69 0.61477
Target:  5'- cCGCCAGCGguaGCAGGucuGCCcCCAGGGa -3'
miRNA:   3'- aGCGGUCGUa--CGUUCc--CGGcGGUUCU- -5'
13292 5' -58.2 NC_003409.1 + 43641 0.68 0.625055
Target:  5'- aCGCCAGCuacguUGUcAGGGgUGCCAAc- -3'
miRNA:   3'- aGCGGUCGu----ACGuUCCCgGCGGUUcu -5'
13292 5' -58.2 NC_003409.1 + 113095 0.68 0.625055
Target:  5'- gCGaCgGGUGUGCGAGGGCaccuCCAGGAg -3'
miRNA:   3'- aGC-GgUCGUACGUUCCCGgc--GGUUCU- -5'
13292 5' -58.2 NC_003409.1 + 111850 0.68 0.635345
Target:  5'- gCGUCGGCcaccGCGGGGGCgGCCGu-- -3'
miRNA:   3'- aGCGGUCGua--CGUUCCCGgCGGUucu -5'
13292 5' -58.2 NC_003409.1 + 94671 0.68 0.676398
Target:  5'- cUCGUgAGCAUGCu--GGCCGCaauGGGg -3'
miRNA:   3'- -AGCGgUCGUACGuucCCGGCGgu-UCU- -5'
13292 5' -58.2 NC_003409.1 + 133036 0.68 0.676398
Target:  5'- gCGCCAGCGccUGCAGGuGCCucaccaccgggGCCGGGu -3'
miRNA:   3'- aGCGGUCGU--ACGUUCcCGG-----------CGGUUCu -5'
13292 5' -58.2 NC_003409.1 + 43097 0.67 0.706832
Target:  5'- aCGCaAGCGgcgGCGAGGGCgGUCuccAGAa -3'
miRNA:   3'- aGCGgUCGUa--CGUUCCCGgCGGu--UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.