miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13293 5' -55.4 NC_003409.1 + 54961 0.66 0.896896
Target:  5'- -gCCGCAagGCcgGCCGGC-CACuGCAGa -3'
miRNA:   3'- aaGGCGUa-UGa-CGGCUGuGUG-CGUCa -5'
13293 5' -55.4 NC_003409.1 + 110991 0.66 0.875734
Target:  5'- cUCCGUuaccUGCggUGCUGGCAgAUGCGGUa -3'
miRNA:   3'- aAGGCGu---AUG--ACGGCUGUgUGCGUCA- -5'
13293 5' -55.4 NC_003409.1 + 72305 0.67 0.8517
Target:  5'- -aCgGCAUGCUGCCacuagugGACGCugGCu-- -3'
miRNA:   3'- aaGgCGUAUGACGG-------CUGUGugCGuca -5'
13293 5' -55.4 NC_003409.1 + 28051 0.67 0.827388
Target:  5'- cUCCGCGcaagcgcacaaUACagauaUGCaCGAUACAUGCAGUc -3'
miRNA:   3'- aAGGCGU-----------AUG-----ACG-GCUGUGUGCGUCA- -5'
13293 5' -55.4 NC_003409.1 + 10018 0.68 0.809692
Target:  5'- -aCCGC-UGCUGCCGGCgGCGgGgGGUc -3'
miRNA:   3'- aaGGCGuAUGACGGCUG-UGUgCgUCA- -5'
13293 5' -55.4 NC_003409.1 + 16279 0.68 0.809692
Target:  5'- gUUCGCAgaga-CCGAUGCACGCAGUc -3'
miRNA:   3'- aAGGCGUaugacGGCUGUGUGCGUCA- -5'
13293 5' -55.4 NC_003409.1 + 112039 0.69 0.752824
Target:  5'- -cCCGCGU-CguaaGCCGACGC-CGCGGa -3'
miRNA:   3'- aaGGCGUAuGa---CGGCUGUGuGCGUCa -5'
13293 5' -55.4 NC_003409.1 + 116603 0.71 0.639628
Target:  5'- uUUCUGUgcuUGCUGCUGACGCugGCGc- -3'
miRNA:   3'- -AAGGCGu--AUGACGGCUGUGugCGUca -5'
13293 5' -55.4 NC_003409.1 + 18492 0.72 0.556037
Target:  5'- -cCCGCGgGCUGUCGAcCAUugGCGGg -3'
miRNA:   3'- aaGGCGUaUGACGGCU-GUGugCGUCa -5'
13293 5' -55.4 NC_003409.1 + 110824 0.72 0.535549
Target:  5'- -aCCGCAU-CUGCCaGCAC-CGCAGg -3'
miRNA:   3'- aaGGCGUAuGACGGcUGUGuGCGUCa -5'
13293 5' -55.4 NC_003409.1 + 24376 0.75 0.410749
Target:  5'- aUCCGUcccacGUGCcGCCG-CGCGCGCAGUg -3'
miRNA:   3'- aAGGCG-----UAUGaCGGCuGUGUGCGUCA- -5'
13293 5' -55.4 NC_003409.1 + 38244 1.04 0.00486
Target:  5'- gUUCCGCAUACUGCCGACACACGCAGUc -3'
miRNA:   3'- -AAGGCGUAUGACGGCUGUGUGCGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.