miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13294 3' -55.9 NC_003409.1 + 33330 0.66 0.909306
Target:  5'- -gGCUgCcuGCCGGUgGUccuCGCGGUCg -3'
miRNA:   3'- cgUGAgGuuCGGUCAgCAu--GCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 28956 0.66 0.903124
Target:  5'- --uCUCCAGGCCAGUUGUA-GCccCCu -3'
miRNA:   3'- cguGAGGUUCGGUCAGCAUgCGccGG- -5'
13294 3' -55.9 NC_003409.1 + 131224 0.66 0.887339
Target:  5'- gGCACUgcucCCAGGCagcaccaACGCGGCCa -3'
miRNA:   3'- -CGUGA----GGUUCGgucagcaUGCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 73843 0.66 0.915251
Target:  5'- aCAgUCCGGGcCCGGUgGUGCaGuuGCCa -3'
miRNA:   3'- cGUgAGGUUC-GGUCAgCAUG-CgcCGG- -5'
13294 3' -55.9 NC_003409.1 + 52484 0.66 0.915251
Target:  5'- aCACUCUAGGUUuggAGU--UACGCGGCg -3'
miRNA:   3'- cGUGAGGUUCGG---UCAgcAUGCGCCGg -5'
13294 3' -55.9 NC_003409.1 + 89103 0.66 0.895397
Target:  5'- cGCACgcagcauaagacCCGAGCCAGUCGcgcccuccauCGC-GCCu -3'
miRNA:   3'- -CGUGa-----------GGUUCGGUCAGCau--------GCGcCGG- -5'
13294 3' -55.9 NC_003409.1 + 120295 0.66 0.903124
Target:  5'- gGCGCUCaacGCCAaUa-UGCGCGGCUg -3'
miRNA:   3'- -CGUGAGguuCGGUcAgcAUGCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 52952 0.66 0.909306
Target:  5'- uGUACgUCgUAAGCCAGUgUGUuucugUGCGGCCc -3'
miRNA:   3'- -CGUG-AG-GUUCGGUCA-GCAu----GCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 90304 0.66 0.909306
Target:  5'- gGCG-UCCAgacgccGGCCAGUUGUugGCGa-- -3'
miRNA:   3'- -CGUgAGGU------UCGGUCAGCAugCGCcgg -5'
13294 3' -55.9 NC_003409.1 + 85803 0.66 0.883187
Target:  5'- --uCUCCAGG-CAGUUGgGCGgGGCUg -3'
miRNA:   3'- cguGAGGUUCgGUCAGCaUGCgCCGG- -5'
13294 3' -55.9 NC_003409.1 + 12098 0.66 0.890062
Target:  5'- uGCACagCAuauuguuGUguGUCGUACGCGcGCa -3'
miRNA:   3'- -CGUGagGUu------CGguCAGCAUGCGC-CGg -5'
13294 3' -55.9 NC_003409.1 + 45578 0.66 0.883187
Target:  5'- -aACUCUggGCCGGgucccgcuUUGUGaucacgcgaGCGGCCu -3'
miRNA:   3'- cgUGAGGuuCGGUC--------AGCAUg--------CGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 54425 0.67 0.868774
Target:  5'- cGCACgucUCCAcGGCCgaucaacuGGUCGagUACcagGCGGCCa -3'
miRNA:   3'- -CGUG---AGGU-UCGG--------UCAGC--AUG---CGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 58061 0.67 0.853509
Target:  5'- aGCAuUUCCAAGCCugcGGUUgaGUACGUGGg- -3'
miRNA:   3'- -CGU-GAGGUUCGG---UCAG--CAUGCGCCgg -5'
13294 3' -55.9 NC_003409.1 + 11861 0.67 0.845572
Target:  5'- gGCcCUCCAGGCUggcuucGGUCGcGCauccuGCGGCUu -3'
miRNA:   3'- -CGuGAGGUUCGG------UCAGCaUG-----CGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 40110 0.67 0.861245
Target:  5'- gGCACUCCGGuaguaucuGCguGUCcucgaauuCGUGGCCg -3'
miRNA:   3'- -CGUGAGGUU--------CGguCAGcau-----GCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 51921 0.67 0.861245
Target:  5'- gGCGCUCgAGGCUccGGgaacCGUGCGUGGa- -3'
miRNA:   3'- -CGUGAGgUUCGG--UCa---GCAUGCGCCgg -5'
13294 3' -55.9 NC_003409.1 + 132116 0.67 0.853509
Target:  5'- gGCACUCCuguaggAGGCCGG-C-UugGUGGUCc -3'
miRNA:   3'- -CGUGAGG------UUCGGUCaGcAugCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 46593 0.67 0.87609
Target:  5'- aCGCUgCgAAGCCcacgGGUUGUugGUGGaCCg -3'
miRNA:   3'- cGUGA-GgUUCGG----UCAGCAugCGCC-GG- -5'
13294 3' -55.9 NC_003409.1 + 133125 0.67 0.87609
Target:  5'- cGCAC-CCAccuGCCuG-CGgauccCGCGGCCg -3'
miRNA:   3'- -CGUGaGGUu--CGGuCaGCau---GCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.