Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13294 | 3' | -55.9 | NC_003409.1 | + | 40309 | 1.14 | 0.001264 |
Target: 5'- uGCACUCCAAGCCAGUCGUACGCGGCCa -3' miRNA: 3'- -CGUGAGGUUCGGUCAGCAUGCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 133017 | 0.79 | 0.269599 |
Target: 5'- -aGCUCCAGGCCGGUC---CGCGGCg -3' miRNA: 3'- cgUGAGGUUCGGUCAGcauGCGCCGg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 60778 | 0.75 | 0.413357 |
Target: 5'- aUACUCCu-GCCAGUCGaACGaGGCCc -3' miRNA: 3'- cGUGAGGuuCGGUCAGCaUGCgCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 119956 | 0.73 | 0.545114 |
Target: 5'- gGCGC-CCAcGCCGG-CGccuggcACGCGGCCa -3' miRNA: 3'- -CGUGaGGUuCGGUCaGCa-----UGCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 63169 | 0.72 | 0.59563 |
Target: 5'- gGCACUCC-AGUCAGUCu--CGCcagGGCCc -3' miRNA: 3'- -CGUGAGGuUCGGUCAGcauGCG---CCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 104911 | 0.71 | 0.626313 |
Target: 5'- gGCGgUCUugguGAGgCGGUCGUGgGCGGUCu -3' miRNA: 3'- -CGUgAGG----UUCgGUCAGCAUgCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 108433 | 0.71 | 0.626313 |
Target: 5'- cGCGCUCCAGGaCCuuGUCGUauAUGauGCCc -3' miRNA: 3'- -CGUGAGGUUC-GGu-CAGCA--UGCgcCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 70198 | 0.71 | 0.626313 |
Target: 5'- cUACUCCAuauGCCGGg-GUGCGCGGg- -3' miRNA: 3'- cGUGAGGUu--CGGUCagCAUGCGCCgg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 27090 | 0.71 | 0.677431 |
Target: 5'- aGCGCaCCAcagaaacGCCuGUCGUACGCGGg- -3' miRNA: 3'- -CGUGaGGUu------CGGuCAGCAUGCGCCgg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 20812 | 0.7 | 0.717703 |
Target: 5'- -gGCUCCAGGgaguucCUGGcCGgGCGCGGCCu -3' miRNA: 3'- cgUGAGGUUC------GGUCaGCaUGCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 36566 | 0.69 | 0.756799 |
Target: 5'- --uCUCCAGcGCCgAGUCGU-UGCGGCg -3' miRNA: 3'- cguGAGGUU-CGG-UCAGCAuGCGCCGg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 108438 | 0.69 | 0.766321 |
Target: 5'- cCGCUCuCGAGCUAGagGc-CGCGGCUa -3' miRNA: 3'- cGUGAG-GUUCGGUCagCauGCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 20731 | 0.68 | 0.794131 |
Target: 5'- gGCACUUUggGgCGG-CGUACGUGGaCg -3' miRNA: 3'- -CGUGAGGuuCgGUCaGCAUGCGCCgG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 95556 | 0.68 | 0.811953 |
Target: 5'- uCGCUCUucaguuaucuGAGCgGGaCGUugGCGGCg -3' miRNA: 3'- cGUGAGG----------UUCGgUCaGCAugCGCCGg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 9276 | 0.68 | 0.829121 |
Target: 5'- gGUACUUUAgccAGCCGGUCaucUACGCGGaacCCg -3' miRNA: 3'- -CGUGAGGU---UCGGUCAGc--AUGCGCC---GG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 11861 | 0.67 | 0.845572 |
Target: 5'- gGCcCUCCAGGCUggcuucGGUCGcGCauccuGCGGCUu -3' miRNA: 3'- -CGuGAGGUUCGG------UCAGCaUG-----CGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 32294 | 0.67 | 0.845572 |
Target: 5'- gGCA-UCCAGGCUGG-CGgacaccucccACGUGGCCa -3' miRNA: 3'- -CGUgAGGUUCGGUCaGCa---------UGCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 31927 | 0.67 | 0.853509 |
Target: 5'- cCACUCgGcGCguGUcCGUACaCGGCCa -3' miRNA: 3'- cGUGAGgUuCGguCA-GCAUGcGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 132116 | 0.67 | 0.853509 |
Target: 5'- gGCACUCCuguaggAGGCCGG-C-UugGUGGUCc -3' miRNA: 3'- -CGUGAGG------UUCGGUCaGcAugCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 58061 | 0.67 | 0.853509 |
Target: 5'- aGCAuUUCCAAGCCugcGGUUgaGUACGUGGg- -3' miRNA: 3'- -CGU-GAGGUUCGG---UCAG--CAUGCGCCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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