miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13294 3' -55.9 NC_003409.1 + 9276 0.68 0.829121
Target:  5'- gGUACUUUAgccAGCCGGUCaucUACGCGGaacCCg -3'
miRNA:   3'- -CGUGAGGU---UCGGUCAGc--AUGCGCC---GG- -5'
13294 3' -55.9 NC_003409.1 + 11861 0.67 0.845572
Target:  5'- gGCcCUCCAGGCUggcuucGGUCGcGCauccuGCGGCUu -3'
miRNA:   3'- -CGuGAGGUUCGG------UCAGCaUG-----CGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 12098 0.66 0.890062
Target:  5'- uGCACagCAuauuguuGUguGUCGUACGCGcGCa -3'
miRNA:   3'- -CGUGagGUu------CGguCAGCAUGCGC-CGg -5'
13294 3' -55.9 NC_003409.1 + 20731 0.68 0.794131
Target:  5'- gGCACUUUggGgCGG-CGUACGUGGaCg -3'
miRNA:   3'- -CGUGAGGuuCgGUCaGCAUGCGCCgG- -5'
13294 3' -55.9 NC_003409.1 + 20812 0.7 0.717703
Target:  5'- -gGCUCCAGGgaguucCUGGcCGgGCGCGGCCu -3'
miRNA:   3'- cgUGAGGUUC------GGUCaGCaUGCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 27090 0.71 0.677431
Target:  5'- aGCGCaCCAcagaaacGCCuGUCGUACGCGGg- -3'
miRNA:   3'- -CGUGaGGUu------CGGuCAGCAUGCGCCgg -5'
13294 3' -55.9 NC_003409.1 + 28956 0.66 0.903124
Target:  5'- --uCUCCAGGCCAGUUGUA-GCccCCu -3'
miRNA:   3'- cguGAGGUUCGGUCAGCAUgCGccGG- -5'
13294 3' -55.9 NC_003409.1 + 31927 0.67 0.853509
Target:  5'- cCACUCgGcGCguGUcCGUACaCGGCCa -3'
miRNA:   3'- cGUGAGgUuCGguCA-GCAUGcGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 32294 0.67 0.845572
Target:  5'- gGCA-UCCAGGCUGG-CGgacaccucccACGUGGCCa -3'
miRNA:   3'- -CGUgAGGUUCGGUCaGCa---------UGCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 33330 0.66 0.909306
Target:  5'- -gGCUgCcuGCCGGUgGUccuCGCGGUCg -3'
miRNA:   3'- cgUGAgGuuCGGUCAgCAu--GCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 35235 0.67 0.87609
Target:  5'- aGUACUUgagGAGCCGG-CgGUAgGUGGCCa -3'
miRNA:   3'- -CGUGAGg--UUCGGUCaG-CAUgCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 36566 0.69 0.756799
Target:  5'- --uCUCCAGcGCCgAGUCGU-UGCGGCg -3'
miRNA:   3'- cguGAGGUU-CGG-UCAGCAuGCGCCGg -5'
13294 3' -55.9 NC_003409.1 + 40110 0.67 0.861245
Target:  5'- gGCACUCCGGuaguaucuGCguGUCcucgaauuCGUGGCCg -3'
miRNA:   3'- -CGUGAGGUU--------CGguCAGcau-----GCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 40309 1.14 0.001264
Target:  5'- uGCACUCCAAGCCAGUCGUACGCGGCCa -3'
miRNA:   3'- -CGUGAGGUUCGGUCAGCAUGCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 45578 0.66 0.883187
Target:  5'- -aACUCUggGCCGGgucccgcuUUGUGaucacgcgaGCGGCCu -3'
miRNA:   3'- cgUGAGGuuCGGUC--------AGCAUg--------CGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 46593 0.67 0.87609
Target:  5'- aCGCUgCgAAGCCcacgGGUUGUugGUGGaCCg -3'
miRNA:   3'- cGUGA-GgUUCGG----UCAGCAugCGCC-GG- -5'
13294 3' -55.9 NC_003409.1 + 51921 0.67 0.861245
Target:  5'- gGCGCUCgAGGCUccGGgaacCGUGCGUGGa- -3'
miRNA:   3'- -CGUGAGgUUCGG--UCa---GCAUGCGCCgg -5'
13294 3' -55.9 NC_003409.1 + 52484 0.66 0.915251
Target:  5'- aCACUCUAGGUUuggAGU--UACGCGGCg -3'
miRNA:   3'- cGUGAGGUUCGG---UCAgcAUGCGCCGg -5'
13294 3' -55.9 NC_003409.1 + 52952 0.66 0.909306
Target:  5'- uGUACgUCgUAAGCCAGUgUGUuucugUGCGGCCc -3'
miRNA:   3'- -CGUG-AG-GUUCGGUCA-GCAu----GCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 54425 0.67 0.868774
Target:  5'- cGCACgucUCCAcGGCCgaucaacuGGUCGagUACcagGCGGCCa -3'
miRNA:   3'- -CGUG---AGGU-UCGG--------UCAGC--AUG---CGCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.