Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13294 | 3' | -55.9 | NC_003409.1 | + | 9276 | 0.68 | 0.829121 |
Target: 5'- gGUACUUUAgccAGCCGGUCaucUACGCGGaacCCg -3' miRNA: 3'- -CGUGAGGU---UCGGUCAGc--AUGCGCC---GG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 11861 | 0.67 | 0.845572 |
Target: 5'- gGCcCUCCAGGCUggcuucGGUCGcGCauccuGCGGCUu -3' miRNA: 3'- -CGuGAGGUUCGG------UCAGCaUG-----CGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 12098 | 0.66 | 0.890062 |
Target: 5'- uGCACagCAuauuguuGUguGUCGUACGCGcGCa -3' miRNA: 3'- -CGUGagGUu------CGguCAGCAUGCGC-CGg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 20731 | 0.68 | 0.794131 |
Target: 5'- gGCACUUUggGgCGG-CGUACGUGGaCg -3' miRNA: 3'- -CGUGAGGuuCgGUCaGCAUGCGCCgG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 20812 | 0.7 | 0.717703 |
Target: 5'- -gGCUCCAGGgaguucCUGGcCGgGCGCGGCCu -3' miRNA: 3'- cgUGAGGUUC------GGUCaGCaUGCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 27090 | 0.71 | 0.677431 |
Target: 5'- aGCGCaCCAcagaaacGCCuGUCGUACGCGGg- -3' miRNA: 3'- -CGUGaGGUu------CGGuCAGCAUGCGCCgg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 28956 | 0.66 | 0.903124 |
Target: 5'- --uCUCCAGGCCAGUUGUA-GCccCCu -3' miRNA: 3'- cguGAGGUUCGGUCAGCAUgCGccGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 31927 | 0.67 | 0.853509 |
Target: 5'- cCACUCgGcGCguGUcCGUACaCGGCCa -3' miRNA: 3'- cGUGAGgUuCGguCA-GCAUGcGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 32294 | 0.67 | 0.845572 |
Target: 5'- gGCA-UCCAGGCUGG-CGgacaccucccACGUGGCCa -3' miRNA: 3'- -CGUgAGGUUCGGUCaGCa---------UGCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 33330 | 0.66 | 0.909306 |
Target: 5'- -gGCUgCcuGCCGGUgGUccuCGCGGUCg -3' miRNA: 3'- cgUGAgGuuCGGUCAgCAu--GCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 35235 | 0.67 | 0.87609 |
Target: 5'- aGUACUUgagGAGCCGG-CgGUAgGUGGCCa -3' miRNA: 3'- -CGUGAGg--UUCGGUCaG-CAUgCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 36566 | 0.69 | 0.756799 |
Target: 5'- --uCUCCAGcGCCgAGUCGU-UGCGGCg -3' miRNA: 3'- cguGAGGUU-CGG-UCAGCAuGCGCCGg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 40110 | 0.67 | 0.861245 |
Target: 5'- gGCACUCCGGuaguaucuGCguGUCcucgaauuCGUGGCCg -3' miRNA: 3'- -CGUGAGGUU--------CGguCAGcau-----GCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 40309 | 1.14 | 0.001264 |
Target: 5'- uGCACUCCAAGCCAGUCGUACGCGGCCa -3' miRNA: 3'- -CGUGAGGUUCGGUCAGCAUGCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 45578 | 0.66 | 0.883187 |
Target: 5'- -aACUCUggGCCGGgucccgcuUUGUGaucacgcgaGCGGCCu -3' miRNA: 3'- cgUGAGGuuCGGUC--------AGCAUg--------CGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 46593 | 0.67 | 0.87609 |
Target: 5'- aCGCUgCgAAGCCcacgGGUUGUugGUGGaCCg -3' miRNA: 3'- cGUGA-GgUUCGG----UCAGCAugCGCC-GG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 51921 | 0.67 | 0.861245 |
Target: 5'- gGCGCUCgAGGCUccGGgaacCGUGCGUGGa- -3' miRNA: 3'- -CGUGAGgUUCGG--UCa---GCAUGCGCCgg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 52484 | 0.66 | 0.915251 |
Target: 5'- aCACUCUAGGUUuggAGU--UACGCGGCg -3' miRNA: 3'- cGUGAGGUUCGG---UCAgcAUGCGCCGg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 52952 | 0.66 | 0.909306 |
Target: 5'- uGUACgUCgUAAGCCAGUgUGUuucugUGCGGCCc -3' miRNA: 3'- -CGUG-AG-GUUCGGUCA-GCAu----GCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 54425 | 0.67 | 0.868774 |
Target: 5'- cGCACgucUCCAcGGCCgaucaacuGGUCGagUACcagGCGGCCa -3' miRNA: 3'- -CGUG---AGGU-UCGG--------UCAGC--AUG---CGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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