miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13294 5' -53.3 NC_003409.1 + 96858 0.66 0.950708
Target:  5'- aGGGGGCACGCuu---CUGgCGGAGg- -3'
miRNA:   3'- -CUCCUGUGCGucuauGAUgGCCUCac -5'
13294 5' -53.3 NC_003409.1 + 44743 0.66 0.946342
Target:  5'- aAGGAgGCGCAcGGccACUACCGGAa-- -3'
miRNA:   3'- cUCCUgUGCGU-CUa-UGAUGGCCUcac -5'
13294 5' -53.3 NC_003409.1 + 27255 0.67 0.936866
Target:  5'- -uGGACGgGCgguGGGUGCUGCUGGAa-- -3'
miRNA:   3'- cuCCUGUgCG---UCUAUGAUGGCCUcac -5'
13294 5' -53.3 NC_003409.1 + 122702 0.67 0.926385
Target:  5'- uGAGGugGCGCGGAaACUggGCaCGGAugacagggaaGUGg -3'
miRNA:   3'- -CUCCugUGCGUCUaUGA--UG-GCCU----------CAC- -5'
13294 5' -53.3 NC_003409.1 + 82395 0.67 0.920766
Target:  5'- -cGGAUGCGCucgu-CUGCCGGAGg- -3'
miRNA:   3'- cuCCUGUGCGucuauGAUGGCCUCac -5'
13294 5' -53.3 NC_003409.1 + 19650 0.69 0.874485
Target:  5'- cAGGGCACGCGuccagGCaACCGGGGUc -3'
miRNA:   3'- cUCCUGUGCGUcua--UGaUGGCCUCAc -5'
13294 5' -53.3 NC_003409.1 + 42672 0.7 0.817093
Target:  5'- aGAGcGAUACGCAGAcUACUcCUGGGGg- -3'
miRNA:   3'- -CUC-CUGUGCGUCU-AUGAuGGCCUCac -5'
13294 5' -53.3 NC_003409.1 + 4584 0.73 0.648186
Target:  5'- aGAGGACGCGUAGGccaGgUGCUGGAGg- -3'
miRNA:   3'- -CUCCUGUGCGUCUa--UgAUGGCCUCac -5'
13294 5' -53.3 NC_003409.1 + 24738 0.81 0.27629
Target:  5'- aGGGGGCGCGCcggggcuccugGGGUGCUGCCGGGGc- -3'
miRNA:   3'- -CUCCUGUGCG-----------UCUAUGAUGGCCUCac -5'
13294 5' -53.3 NC_003409.1 + 40275 1.08 0.005246
Target:  5'- cGAGGACACGCAGAUACUACCGGAGUGc -3'
miRNA:   3'- -CUCCUGUGCGUCUAUGAUGGCCUCAC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.