miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13296 5' -50.8 NC_003409.1 + 27935 0.66 0.991082
Target:  5'- gUCAGGggUCCcuccaGUGCaCGCCGcuAGg -3'
miRNA:   3'- aAGUUCuuAGGc----CAUGcGCGGCuuUC- -5'
13296 5' -50.8 NC_003409.1 + 82902 0.66 0.986749
Target:  5'- gUCGAGAAaCCGcaGC-CGCCGGAGGc -3'
miRNA:   3'- aAGUUCUUaGGCcaUGcGCGGCUUUC- -5'
13296 5' -50.8 NC_003409.1 + 75122 0.66 0.986749
Target:  5'- uUUCAcAGA--CCGGUAUG-GCCGggGGc -3'
miRNA:   3'- -AAGU-UCUuaGGCCAUGCgCGGCuuUC- -5'
13296 5' -50.8 NC_003409.1 + 23240 0.67 0.980953
Target:  5'- gUUCucGGAAagCCGGUgggGCGCGCUGGAu- -3'
miRNA:   3'- -AAGu-UCUUa-GGCCA---UGCGCGGCUUuc -5'
13296 5' -50.8 NC_003409.1 + 88034 0.67 0.980953
Target:  5'- gUCAGGGGucUCCGGcguCGCacagacGCCGggGGa -3'
miRNA:   3'- aAGUUCUU--AGGCCau-GCG------CGGCuuUC- -5'
13296 5' -50.8 NC_003409.1 + 92127 0.67 0.976151
Target:  5'- cUgAAGggUcCCGGUACGCGUCc---- -3'
miRNA:   3'- aAgUUCuuA-GGCCAUGCGCGGcuuuc -5'
13296 5' -50.8 NC_003409.1 + 55764 0.67 0.97589
Target:  5'- cUCGGGAcUCUGGUACGCaaggcggGCC-AGAGg -3'
miRNA:   3'- aAGUUCUuAGGCCAUGCG-------CGGcUUUC- -5'
13296 5' -50.8 NC_003409.1 + 74069 0.68 0.96737
Target:  5'- -cCGAGGcuUCUGGUugggcgaGCGCCGGGAGg -3'
miRNA:   3'- aaGUUCUu-AGGCCAug-----CGCGGCUUUC- -5'
13296 5' -50.8 NC_003409.1 + 86053 0.68 0.956515
Target:  5'- uUUCuguAGAugCCGGggAUGCGCCGAAAa -3'
miRNA:   3'- -AAGu--UCUuaGGCCa-UGCGCGGCUUUc -5'
13296 5' -50.8 NC_003409.1 + 67723 0.69 0.93855
Target:  5'- -gCGAGGAUgUGGUGCGCuGCCaGAGAc -3'
miRNA:   3'- aaGUUCUUAgGCCAUGCG-CGG-CUUUc -5'
13296 5' -50.8 NC_003409.1 + 24997 0.7 0.928009
Target:  5'- -cCGGGAucccccUCCGGggagggugGCGCGCCGGGAu -3'
miRNA:   3'- aaGUUCUu-----AGGCCa-------UGCGCGGCUUUc -5'
13296 5' -50.8 NC_003409.1 + 24877 0.7 0.928009
Target:  5'- -cCGGGAucccccUCCGGggagggugGCGCGCCGGGAu -3'
miRNA:   3'- aaGUUCUu-----AGGCCa-------UGCGCGGCUUUc -5'
13296 5' -50.8 NC_003409.1 + 24817 0.7 0.928009
Target:  5'- -cCGGGAucccccUCCGGggagggugGCGCGCCGGGAu -3'
miRNA:   3'- aaGUUCUu-----AGGCCa-------UGCGCGGCUUUc -5'
13296 5' -50.8 NC_003409.1 + 24937 0.7 0.928009
Target:  5'- -cCGGGAucccccUCCGGggagggugGCGCGCCGGGAu -3'
miRNA:   3'- aaGUUCUu-----AGGCCa-------UGCGCGGCUUUc -5'
13296 5' -50.8 NC_003409.1 + 24757 0.7 0.922343
Target:  5'- -cCGGGAucccccUCCGGggaggggGCGCGCCGggGc -3'
miRNA:   3'- aaGUUCUu-----AGGCCa------UGCGCGGCuuUc -5'
13296 5' -50.8 NC_003409.1 + 41777 1.07 0.009594
Target:  5'- uUUCAAGAAUCCGGUACGCGCCGAAAGa -3'
miRNA:   3'- -AAGUUCUUAGGCCAUGCGCGGCUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.