miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
13298	3'	-54.5	NC_003409.1	+	52163	0.66	0.938887
	Target:  5'- gCUCaGUCgcacGGGGGGUgGCCUGUggCGUGUg -3' miRNA:   3'- -GAGaCAG----UCUCCUA-CGGACA--GCACGg -5'
13298	3'	-54.5	NC_003409.1	+	115963	0.66	0.933931
	Target:  5'- gUCUG-CAGcgccuuGGGUGCCUcugggUGUGCCg -3' miRNA:   3'- gAGACaGUCu-----CCUACGGAca---GCACGG- -5'
13298	3'	-54.5	NC_003409.1	+	47591	0.66	0.928728
	Target:  5'- cCUCUGaCAGAGG-UGUUugaggggGUgGUGCCa -3' miRNA:   3'- -GAGACaGUCUCCuACGGa------CAgCACGG- -5'
13298	3'	-54.5	NC_003409.1	+	30942	0.66	0.917581
	Target:  5'- -cCUGUUGuuGGAUGCuCUG-CGUGCUg -3' miRNA:   3'- gaGACAGUcuCCUACG-GACaGCACGG- -5'
13298	3'	-54.5	NC_003409.1	+	31208	0.68	0.878305
	Target:  5'- -gCUG-CAGAGGAggacggcggugGcCCUG-CGUGCCa -3' miRNA:   3'- gaGACaGUCUCCUa----------C-GGACaGCACGG- -5'
13298	3'	-54.5	NC_003409.1	+	40198	0.69	0.830918
	Target:  5'- aUCUGcCAGcGGGAUGCC-GUCGcGUCc -3' miRNA:   3'- gAGACaGUC-UCCUACGGaCAGCaCGG- -5'
13298	3'	-54.5	NC_003409.1	+	129763	0.83	0.17314
	Target:  5'- -gCUGUCGGGGGAUGCCUGUCGa--- -3' miRNA:   3'- gaGACAGUCUCCUACGGACAGCacgg -5'
13298	3'	-54.5	NC_003409.1	+	47739	1.13	0.001941
	Target:  5'- cCUCUGUCAGAGGAUGCCUGUCGUGCCg -3' miRNA:   3'- -GAGACAGUCUCCUACGGACAGCACGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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