Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13298 | 5' | -59.9 | NC_003409.1 | + | 127325 | 0.66 | 0.685946 |
Target: 5'- aGAcCAGAUuucccgaGGAuGGCGCCCCC-GGGAa -3' miRNA: 3'- aCUcGUCUG-------CCU-CUGUGGGGGaCCCU- -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 48721 | 0.67 | 0.676982 |
Target: 5'- gGGGUAGGCGaGGGCACgCUCC-GGGGc -3' miRNA: 3'- aCUCGUCUGCcUCUGUG-GGGGaCCCU- -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 35380 | 0.67 | 0.666988 |
Target: 5'- gGGGCGcGGCGGAGAaaagGCCUCUgugacuagGGGAg -3' miRNA: 3'- aCUCGU-CUGCCUCUg---UGGGGGa-------CCCU- -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 116191 | 0.67 | 0.663984 |
Target: 5'- cUGGGCAGGCGGAauaguacguccucuGACACCaCCUUagcauugaGGGc -3' miRNA: 3'- -ACUCGUCUGCCU--------------CUGUGG-GGGA--------CCCu -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 57139 | 0.68 | 0.576742 |
Target: 5'- -cAGCGGACaGGAucuGAgucauCACCaCCCUGGGAa -3' miRNA: 3'- acUCGUCUG-CCU---CU-----GUGG-GGGACCCU- -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 93906 | 0.68 | 0.576742 |
Target: 5'- cGAGcCAGACaGGAGAgGCCCUUUaccaucuauaaGGGAa -3' miRNA: 3'- aCUC-GUCUG-CCUCUgUGGGGGA-----------CCCU- -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 52328 | 0.68 | 0.566815 |
Target: 5'- --cGguGGCGGGGGCACgggcuCUUCUGGGAa -3' miRNA: 3'- acuCguCUGCCUCUGUG-----GGGGACCCU- -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 107798 | 0.69 | 0.527606 |
Target: 5'- uUGcAGCAGgccACGGuGGGCACgCCCCUGGa- -3' miRNA: 3'- -AC-UCGUC---UGCC-UCUGUG-GGGGACCcu -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 33938 | 0.69 | 0.517956 |
Target: 5'- uUGAG-AGGCGccagcGAGGCGCgCUCCUGGGGg -3' miRNA: 3'- -ACUCgUCUGC-----CUCUGUG-GGGGACCCU- -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 12002 | 0.7 | 0.47086 |
Target: 5'- aGGGCcugcuggaGGACGuGGGucagguuUACCCCCUGGGGu -3' miRNA: 3'- aCUCG--------UCUGC-CUCu------GUGGGGGACCCU- -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 46266 | 0.7 | 0.452634 |
Target: 5'- aUGcAGCuGGCGGuccuGAUACgcguCCCCUGGGAa -3' miRNA: 3'- -AC-UCGuCUGCCu---CUGUG----GGGGACCCU- -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 12196 | 0.71 | 0.400393 |
Target: 5'- gGAGaGGACGGAGugGCCCCCa---- -3' miRNA: 3'- aCUCgUCUGCCUCugUGGGGGacccu -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 71984 | 0.74 | 0.281281 |
Target: 5'- gGAGCggAGACGGccGGACGCUCCCacaaaaUGGGAg -3' miRNA: 3'- aCUCG--UCUGCC--UCUGUGGGGG------ACCCU- -5' |
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13298 | 5' | -59.9 | NC_003409.1 | + | 47701 | 0.96 | 0.008911 |
Target: 5'- gUGAGCAGACGGA-ACACCCCCUGGGAa -3' miRNA: 3'- -ACUCGUCUGCCUcUGUGGGGGACCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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