miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13299 3' -54.6 NC_003409.1 + 66602 0.66 0.949714
Target:  5'- uCCCCCUCCUGCccCAGAaCGUccucggAGCu -3'
miRNA:   3'- -GGGGGGGGGCGaaGUUUaGCAa-----UCGc -5'
13299 3' -54.6 NC_003409.1 + 76736 0.66 0.940824
Target:  5'- aCCCCCgCCCGUguugUCGAGgcuccucuUCGUcgccuguuauUGGCa -3'
miRNA:   3'- -GGGGGgGGGCGa---AGUUU--------AGCA----------AUCGc -5'
13299 3' -54.6 NC_003409.1 + 25743 0.66 0.940824
Target:  5'- cCCCCCCCCCGg--CAca-CGUagGGCu -3'
miRNA:   3'- -GGGGGGGGGCgaaGUuuaGCAa-UCGc -5'
13299 3' -54.6 NC_003409.1 + 131411 0.66 0.93602
Target:  5'- cCCaCCUCCCCGCgcCGuguggccgCGUUGGUGc -3'
miRNA:   3'- -GG-GGGGGGGCGaaGUuua-----GCAAUCGC- -5'
13299 3' -54.6 NC_003409.1 + 26915 0.67 0.925689
Target:  5'- cCCCaCCCCCCGCguaCGAcaggCGUUucuGUGu -3'
miRNA:   3'- -GGG-GGGGGGCGaa-GUUua--GCAAu--CGC- -5'
13299 3' -54.6 NC_003409.1 + 94172 0.67 0.920161
Target:  5'- gCCCCCCCCaGCcgguuGUCGggcuGCGg -3'
miRNA:   3'- gGGGGGGGG-CGaaguuUAGCaau-CGC- -5'
13299 3' -54.6 NC_003409.1 + 115680 0.67 0.919595
Target:  5'- uCUCUCCCCCGCUUCA-------GGCa -3'
miRNA:   3'- -GGGGGGGGGCGAAGUuuagcaaUCGc -5'
13299 3' -54.6 NC_003409.1 + 61769 0.67 0.895647
Target:  5'- cCCCCUCUCCGCUUCAAGcagggacaGUaGGUc -3'
miRNA:   3'- -GGGGGGGGGCGAAGUUUag------CAaUCGc -5'
13299 3' -54.6 NC_003409.1 + 24196 0.68 0.86742
Target:  5'- gCCCCCCCUCGCgcacuGcgCGcgcGGCGg -3'
miRNA:   3'- -GGGGGGGGGCGaagu-UuaGCaa-UCGC- -5'
13299 3' -54.6 NC_003409.1 + 24122 0.69 0.835777
Target:  5'- cCCCCCCCCCGCcacCGAAcaacccCGUggacagGGCc -3'
miRNA:   3'- -GGGGGGGGGCGaa-GUUUa-----GCAa-----UCGc -5'
13299 3' -54.6 NC_003409.1 + 27531 0.69 0.810053
Target:  5'- gCCCCCgUCCaCGUUUUAugcugCGUUAGCGu -3'
miRNA:   3'- -GGGGG-GGG-GCGAAGUuua--GCAAUCGC- -5'
13299 3' -54.6 NC_003409.1 + 75322 0.69 0.810053
Target:  5'- cCCCCUCCCCGCgcgUUCAAcgCcc-AGCa -3'
miRNA:   3'- -GGGGGGGGGCG---AAGUUuaGcaaUCGc -5'
13299 3' -54.6 NC_003409.1 + 56453 0.71 0.754436
Target:  5'- aCCUCUCucggguggCCUGCaUCAGGUCGUUGGCa -3'
miRNA:   3'- -GGGGGG--------GGGCGaAGUUUAGCAAUCGc -5'
13299 3' -54.6 NC_003409.1 + 36562 0.71 0.705004
Target:  5'- aCCCUCUCCaGCgcCGAGUCGUUgcGGCGg -3'
miRNA:   3'- gGGGGGGGG-CGaaGUUUAGCAA--UCGC- -5'
13299 3' -54.6 NC_003409.1 + 114550 0.74 0.561752
Target:  5'- gCCCCaCCCCGCUgucgcCAugaguGUCGUUGGUa -3'
miRNA:   3'- gGGGG-GGGGCGAa----GUu----UAGCAAUCGc -5'
13299 3' -54.6 NC_003409.1 + 74381 0.77 0.401053
Target:  5'- aCCCUCCCCCGCUUCcuucggcccgGAGUCuccGGCGg -3'
miRNA:   3'- -GGGGGGGGGCGAAG----------UUUAGcaaUCGC- -5'
13299 3' -54.6 NC_003409.1 + 47960 1.1 0.003136
Target:  5'- cCCCCCCCCCGCUUCAAAUCGUUAGCGu -3'
miRNA:   3'- -GGGGGGGGGCGAAGUUUAGCAAUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.