Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13299 | 5' | -54.6 | NC_003409.1 | + | 11911 | 0.66 | 0.935555 |
Target: 5'- uGgCGCCAucuAGUgUUCUGCCGAGcagcuugAGGa -3' miRNA: 3'- -CgGCGGUu--UCA-GAGACGGCUCa------UCCg -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 73864 | 0.66 | 0.925077 |
Target: 5'- aGuuGCCAAcaguAGUCccUCUGCCGGccAGcGCg -3' miRNA: 3'- -CggCGGUU----UCAG--AGACGGCUcaUC-CG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 74556 | 0.66 | 0.919468 |
Target: 5'- uCCGCCGGAGaCUCcggGCCGA--AGGa -3' miRNA: 3'- cGGCGGUUUCaGAGa--CGGCUcaUCCg -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 28101 | 0.66 | 0.918317 |
Target: 5'- cGCCGCuCAGAagcacacGUCUUcggccaaUGCCGuGUuGGCg -3' miRNA: 3'- -CGGCG-GUUU-------CAGAG-------ACGGCuCAuCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 67041 | 0.66 | 0.918317 |
Target: 5'- cGUCGCCAccuucgaGGGUCUCUGUCaucuuGGUgacguuauuuuccAGGCa -3' miRNA: 3'- -CGGCGGU-------UUCAGAGACGGc----UCA-------------UCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 48793 | 0.67 | 0.901173 |
Target: 5'- gGCCagggGUCAcAGUUUCcagGCCGAGcUAGGUa -3' miRNA: 3'- -CGG----CGGUuUCAGAGa--CGGCUC-AUCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 134350 | 0.67 | 0.894591 |
Target: 5'- gGCUGCCGagaaacccgcGAGaUCUCUGggGAGUAGGa -3' miRNA: 3'- -CGGCGGU----------UUC-AGAGACggCUCAUCCg -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 23252 | 0.68 | 0.84216 |
Target: 5'- aGCUuuGCCGAAGuUCUCggaaaGCCGGugGGGCg -3' miRNA: 3'- -CGG--CGGUUUC-AGAGa----CGGCUcaUCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 12290 | 0.68 | 0.84216 |
Target: 5'- uCCGuCCaAGAGUCUCUgGCCuGGGUgcgggGGGCc -3' miRNA: 3'- cGGC-GG-UUUCAGAGA-CGG-CUCA-----UCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 59019 | 0.69 | 0.82531 |
Target: 5'- --gGCUcuGGUCUUUGCUGGGagGGGCg -3' miRNA: 3'- cggCGGuuUCAGAGACGGCUCa-UCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 32982 | 0.69 | 0.816609 |
Target: 5'- -aUGCCAcagAGGUCUCUGCU-AGUuuGGGCc -3' miRNA: 3'- cgGCGGU---UUCAGAGACGGcUCA--UCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 97865 | 0.69 | 0.807736 |
Target: 5'- uCUGUCAguagguAGGUCUCUgcaaGCCGGGUgAGGCc -3' miRNA: 3'- cGGCGGU------UUCAGAGA----CGGCUCA-UCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 95879 | 0.69 | 0.807736 |
Target: 5'- aCCGaUCu--GUgUCUGCCGAGggAGGCg -3' miRNA: 3'- cGGC-GGuuuCAgAGACGGCUCa-UCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 51498 | 0.69 | 0.789505 |
Target: 5'- gGUCGCCAGGGUCaUCccGCCG-GUuGGUg -3' miRNA: 3'- -CGGCGGUUUCAG-AGa-CGGCuCAuCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 24673 | 0.7 | 0.77069 |
Target: 5'- uGCUGCCGGGGcUCcuggggugCUGCCGGGgcuccugGGGUg -3' miRNA: 3'- -CGGCGGUUUC-AGa-------GACGGCUCa------UCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 24713 | 0.7 | 0.77069 |
Target: 5'- uGCUGCCGGGGcUCcuggggugCUGCCGGGgcuccugGGGUg -3' miRNA: 3'- -CGGCGGUUUC-AGa-------GACGGCUCa------UCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 24633 | 0.7 | 0.77069 |
Target: 5'- uGCUGCCGGGGcUCcuggggugCUGCCGGGgcuccugGGGUg -3' miRNA: 3'- -CGGCGGUUUC-AGa-------GACGGCUCa------UCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 24593 | 0.7 | 0.77069 |
Target: 5'- uGCUGCCGGGGcUCcuggggugCUGCCGGGgcuccugGGGUg -3' miRNA: 3'- -CGGCGGUUUC-AGa-------GACGGCUCa------UCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 24513 | 0.7 | 0.77069 |
Target: 5'- uGCUGCCGGGGcUCcuggggugCUGCCGGGgcuccugGGGUg -3' miRNA: 3'- -CGGCGGUUUC-AGa-------GACGGCUCa------UCCG- -5' |
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13299 | 5' | -54.6 | NC_003409.1 | + | 24473 | 0.7 | 0.77069 |
Target: 5'- uGCUGCCGGGGcUCcuggggugCUGCCGGGgcuccugGGGUg -3' miRNA: 3'- -CGGCGGUUUC-AGa-------GACGGCUCa------UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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