Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13300 | 3' | -55.5 | NC_003409.1 | + | 22614 | 0.66 | 0.885391 |
Target: 5'- cAUUugGGGcuGCUcuucugGGUGGCCGUg- -3' miRNA: 3'- uUAGugCCCucCGAa-----CCACCGGUAag -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 42686 | 0.66 | 0.870689 |
Target: 5'- cGUCA-GGGAGGCgcucGGUGGCa---- -3' miRNA: 3'- uUAGUgCCCUCCGaa--CCACCGguaag -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 48819 | 0.66 | 0.862995 |
Target: 5'- gAAUCAaGGGAGGggUGGauagauugGGCCAggggUCa -3' miRNA: 3'- -UUAGUgCCCUCCgaACCa-------CCGGUa---AG- -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 109852 | 0.66 | 0.862995 |
Target: 5'- ---gGCGGGAGGC--GGUGGCg---- -3' miRNA: 3'- uuagUGCCCUCCGaaCCACCGguaag -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 56281 | 0.67 | 0.84695 |
Target: 5'- -uUCACGGGGcGCUUuaagauacgcGGUGGCCuUUUu -3' miRNA: 3'- uuAGUGCCCUcCGAA----------CCACCGGuAAG- -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 87905 | 0.67 | 0.84695 |
Target: 5'- uGUCACGGGA----UGGUGGCC--UCa -3' miRNA: 3'- uUAGUGCCCUccgaACCACCGGuaAG- -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 76684 | 0.67 | 0.84695 |
Target: 5'- uGGUUugGGGGuuggguuguGGCgUGGUGGCUggUCc -3' miRNA: 3'- -UUAGugCCCU---------CCGaACCACCGGuaAG- -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 66970 | 0.67 | 0.838613 |
Target: 5'- --gCACaGGGGGUUUcacuaaguagGGUGGCCAUaUCg -3' miRNA: 3'- uuaGUGcCCUCCGAA----------CCACCGGUA-AG- -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 118058 | 0.67 | 0.830077 |
Target: 5'- --gCGCuGGAGGCUUGG-GGCgAUa- -3' miRNA: 3'- uuaGUGcCCUCCGAACCaCCGgUAag -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 111286 | 0.68 | 0.79411 |
Target: 5'- --aCAUGGGAGGUgucugUGGUgGGCUAa-- -3' miRNA: 3'- uuaGUGCCCUCCGa----ACCA-CCGGUaag -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 85078 | 0.68 | 0.784707 |
Target: 5'- --aCACGGcAGGCUgUGGUGGCUg--- -3' miRNA: 3'- uuaGUGCCcUCCGA-ACCACCGGuaag -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 22136 | 0.69 | 0.722525 |
Target: 5'- cGGUCACGGG-GGCgUGGauuuuuugggguguUGGCC-UUCg -3' miRNA: 3'- -UUAGUGCCCuCCGaACC--------------ACCGGuAAG- -5' |
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13300 | 3' | -55.5 | NC_003409.1 | + | 49166 | 1.08 | 0.002644 |
Target: 5'- cAAUCACGGGAGGCUUGGUGGCCAUUCg -3' miRNA: 3'- -UUAGUGCCCUCCGAACCACCGGUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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