miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13300 3' -55.5 NC_003409.1 + 22614 0.66 0.885391
Target:  5'- cAUUugGGGcuGCUcuucugGGUGGCCGUg- -3'
miRNA:   3'- uUAGugCCCucCGAa-----CCACCGGUAag -5'
13300 3' -55.5 NC_003409.1 + 42686 0.66 0.870689
Target:  5'- cGUCA-GGGAGGCgcucGGUGGCa---- -3'
miRNA:   3'- uUAGUgCCCUCCGaa--CCACCGguaag -5'
13300 3' -55.5 NC_003409.1 + 48819 0.66 0.862995
Target:  5'- gAAUCAaGGGAGGggUGGauagauugGGCCAggggUCa -3'
miRNA:   3'- -UUAGUgCCCUCCgaACCa-------CCGGUa---AG- -5'
13300 3' -55.5 NC_003409.1 + 109852 0.66 0.862995
Target:  5'- ---gGCGGGAGGC--GGUGGCg---- -3'
miRNA:   3'- uuagUGCCCUCCGaaCCACCGguaag -5'
13300 3' -55.5 NC_003409.1 + 56281 0.67 0.84695
Target:  5'- -uUCACGGGGcGCUUuaagauacgcGGUGGCCuUUUu -3'
miRNA:   3'- uuAGUGCCCUcCGAA----------CCACCGGuAAG- -5'
13300 3' -55.5 NC_003409.1 + 87905 0.67 0.84695
Target:  5'- uGUCACGGGA----UGGUGGCC--UCa -3'
miRNA:   3'- uUAGUGCCCUccgaACCACCGGuaAG- -5'
13300 3' -55.5 NC_003409.1 + 76684 0.67 0.84695
Target:  5'- uGGUUugGGGGuuggguuguGGCgUGGUGGCUggUCc -3'
miRNA:   3'- -UUAGugCCCU---------CCGaACCACCGGuaAG- -5'
13300 3' -55.5 NC_003409.1 + 66970 0.67 0.838613
Target:  5'- --gCACaGGGGGUUUcacuaaguagGGUGGCCAUaUCg -3'
miRNA:   3'- uuaGUGcCCUCCGAA----------CCACCGGUA-AG- -5'
13300 3' -55.5 NC_003409.1 + 118058 0.67 0.830077
Target:  5'- --gCGCuGGAGGCUUGG-GGCgAUa- -3'
miRNA:   3'- uuaGUGcCCUCCGAACCaCCGgUAag -5'
13300 3' -55.5 NC_003409.1 + 111286 0.68 0.79411
Target:  5'- --aCAUGGGAGGUgucugUGGUgGGCUAa-- -3'
miRNA:   3'- uuaGUGCCCUCCGa----ACCA-CCGGUaag -5'
13300 3' -55.5 NC_003409.1 + 85078 0.68 0.784707
Target:  5'- --aCACGGcAGGCUgUGGUGGCUg--- -3'
miRNA:   3'- uuaGUGCCcUCCGA-ACCACCGGuaag -5'
13300 3' -55.5 NC_003409.1 + 22136 0.69 0.722525
Target:  5'- cGGUCACGGG-GGCgUGGauuuuuugggguguUGGCC-UUCg -3'
miRNA:   3'- -UUAGUGCCCuCCGaACC--------------ACCGGuAAG- -5'
13300 3' -55.5 NC_003409.1 + 49166 1.08 0.002644
Target:  5'- cAAUCACGGGAGGCUUGGUGGCCAUUCg -3'
miRNA:   3'- -UUAGUGCCCUCCGAACCACCGGUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.