Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13301 | 3' | -61.7 | NC_003409.1 | + | 131528 | 0.67 | 0.586563 |
Target: 5'- --gGGUGUGCCACgcagcgguAGUCccuGGCCGCCc -3' miRNA: 3'- ccaCCGCGCGGUG--------UCAGc--UCGGCGGu -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 109679 | 0.68 | 0.509333 |
Target: 5'- cGG-GGCGCGCgCGCauagccgucuuGGUgUGGGCCGUCAc -3' miRNA: 3'- -CCaCCGCGCG-GUG-----------UCA-GCUCGGCGGU- -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 104869 | 0.66 | 0.645916 |
Target: 5'- cGGUGGCcaccaGCCAcCAGaCGAGCaccaGCCc -3' miRNA: 3'- -CCACCGcg---CGGU-GUCaGCUCGg---CGGu -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 101587 | 0.67 | 0.596416 |
Target: 5'- gGGUGGCGCGCCGguG-CGGuguuCUGCg- -3' miRNA: 3'- -CCACCGCGCGGUguCaGCUc---GGCGgu -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 87169 | 0.71 | 0.332584 |
Target: 5'- gGGUGGUGCGCCgGCGGagGGcGUgGCCGa -3' miRNA: 3'- -CCACCGCGCGG-UGUCagCU-CGgCGGU- -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 81508 | 0.66 | 0.655815 |
Target: 5'- --aGGCGCGCCGCAcGUacUGcGCCuuGCCGu -3' miRNA: 3'- ccaCCGCGCGGUGU-CA--GCuCGG--CGGU- -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 78522 | 0.69 | 0.454314 |
Target: 5'- gGGcUGGgGuCGUCugGGUUuuaGAGCCGCCGc -3' miRNA: 3'- -CC-ACCgC-GCGGugUCAG---CUCGGCGGU- -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 75015 | 0.7 | 0.394439 |
Target: 5'- aGUGGCGCGCC-CGGUgaCGAacauCUGCCAu -3' miRNA: 3'- cCACCGCGCGGuGUCA--GCUc---GGCGGU- -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 67328 | 0.68 | 0.509333 |
Target: 5'- gGGUGGCGUggagGCCAggaugcgGGUUGGGUCGCUg -3' miRNA: 3'- -CCACCGCG----CGGUg------UCAGCUCGGCGGu -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 63087 | 0.66 | 0.636009 |
Target: 5'- cGGUGGUGUGCC-UGGUgGAGCaCGaagaCAu -3' miRNA: 3'- -CCACCGCGCGGuGUCAgCUCG-GCg---GU- -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 53132 | 0.76 | 0.160872 |
Target: 5'- aGGUGGUGCGCCGCGG-CGAcCUGaCCAa -3' miRNA: 3'- -CCACCGCGCGGUGUCaGCUcGGC-GGU- -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 49259 | 1.1 | 0.000719 |
Target: 5'- gGGUGGCGCGCCACAGUCGAGCCGCCAg -3' miRNA: 3'- -CCACCGCGCGGUGUCAGCUCGGCGGU- -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 49108 | 0.71 | 0.362597 |
Target: 5'- uGUGGCGCGCCACcccacuAGgcaGGGCCaCCGu -3' miRNA: 3'- cCACCGCGCGGUG------UCag-CUCGGcGGU- -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 40967 | 0.66 | 0.606294 |
Target: 5'- cGUGGCuuGCauUAGgCGAGCCGCCGc -3' miRNA: 3'- cCACCGcgCGguGUCaGCUCGGCGGU- -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 40570 | 0.67 | 0.596416 |
Target: 5'- --cGGCGCGCCugucgACAGgCGAGCgCGUg- -3' miRNA: 3'- ccaCCGCGCGG-----UGUCaGCUCG-GCGgu -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 33988 | 0.69 | 0.472311 |
Target: 5'- aGGguacgGGCGCGCCAgGGacagCGc-CCGCCAu -3' miRNA: 3'- -CCa----CCGCGCGGUgUCa---GCucGGCGGU- -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 30988 | 0.66 | 0.655815 |
Target: 5'- gGGUGGUGCGCCAacuaccgCGAGUC-CUg -3' miRNA: 3'- -CCACCGCGCGGUguca---GCUCGGcGGu -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 27054 | 0.7 | 0.411025 |
Target: 5'- -aUGGCGUugucGCCucgaGCAGUUGGGCCGCa- -3' miRNA: 3'- ccACCGCG----CGG----UGUCAGCUCGGCGgu -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 26935 | 0.67 | 0.566956 |
Target: 5'- cGG-GGCGCGCCguguuuuggacaACuuGUCcgGAGCUGCCu -3' miRNA: 3'- -CCaCCGCGCGG------------UGu-CAG--CUCGGCGGu -5' |
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13301 | 3' | -61.7 | NC_003409.1 | + | 25007 | 0.69 | 0.445457 |
Target: 5'- gGGUGGCGCGCCGggaucccccucCGGggaGGGUggcgCGCCGg -3' miRNA: 3'- -CCACCGCGCGGU-----------GUCag-CUCG----GCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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