miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13301 5' -56 NC_003409.1 + 119959 0.66 0.849929
Target:  5'- cGCGGCGccc-ACGCcGGCGCCUGg- -3'
miRNA:   3'- aCGUCGUcaucUGCGuCCGCGGAUac -5'
13301 5' -56 NC_003409.1 + 67802 0.66 0.849929
Target:  5'- cGCGGUGGgugcGGCGCgcaggGGGCGCCa--- -3'
miRNA:   3'- aCGUCGUCau--CUGCG-----UCCGCGGauac -5'
13301 5' -56 NC_003409.1 + 59253 0.66 0.841715
Target:  5'- gUGCGGCAuacaugccucuGgcGACGUcGGCGCCg--- -3'
miRNA:   3'- -ACGUCGU-----------CauCUGCGuCCGCGGauac -5'
13301 5' -56 NC_003409.1 + 26399 0.66 0.841715
Target:  5'- cGCAcGCAGUGG-CGUAGuCGCCUuaaccuGUGg -3'
miRNA:   3'- aCGU-CGUCAUCuGCGUCcGCGGA------UAC- -5'
13301 5' -56 NC_003409.1 + 40540 0.66 0.833302
Target:  5'- cGCGGCcGUu--CGguGGCGCCaGUGc -3'
miRNA:   3'- aCGUCGuCAucuGCguCCGCGGaUAC- -5'
13301 5' -56 NC_003409.1 + 127040 0.66 0.833302
Target:  5'- cGCGGUuGUAGAUGUAGGUcaucGCCa--- -3'
miRNA:   3'- aCGUCGuCAUCUGCGUCCG----CGGauac -5'
13301 5' -56 NC_003409.1 + 20187 0.67 0.797811
Target:  5'- gUGCGGuCAG-AGugGUGGGCGUCa--- -3'
miRNA:   3'- -ACGUC-GUCaUCugCGUCCGCGGauac -5'
13301 5' -56 NC_003409.1 + 43539 0.68 0.779088
Target:  5'- gGCAGCA--GGugGCcGGCGuCCUGg- -3'
miRNA:   3'- aCGUCGUcaUCugCGuCCGC-GGAUac -5'
13301 5' -56 NC_003409.1 + 105247 0.68 0.749991
Target:  5'- uUGUGGCAGuUAGgucagagagcaGCGCuguGGCGCCUGg- -3'
miRNA:   3'- -ACGUCGUC-AUC-----------UGCGu--CCGCGGAUac -5'
13301 5' -56 NC_003409.1 + 134078 0.68 0.747023
Target:  5'- uUGCAGgAGUGGGCuagaguggaaguggGCAGGCaCCUGg- -3'
miRNA:   3'- -ACGUCgUCAUCUG--------------CGUCCGcGGAUac -5'
13301 5' -56 NC_003409.1 + 110025 0.69 0.709719
Target:  5'- gGUGGCAGUGuuGCGcCGGGCGCCa--- -3'
miRNA:   3'- aCGUCGUCAUc-UGC-GUCCGCGGauac -5'
13301 5' -56 NC_003409.1 + 88686 0.69 0.68913
Target:  5'- cUGcCGGCAGgcagGGGCGCGGGgGCUg--- -3'
miRNA:   3'- -AC-GUCGUCa---UCUGCGUCCgCGGauac -5'
13301 5' -56 NC_003409.1 + 92033 0.69 0.678756
Target:  5'- cGUGGCGGUGGGa-CAGGgGCCUAc- -3'
miRNA:   3'- aCGUCGUCAUCUgcGUCCgCGGAUac -5'
13301 5' -56 NC_003409.1 + 60461 0.7 0.657896
Target:  5'- aUGCGGCAGUGGACGUGaaCG-CUGUGa -3'
miRNA:   3'- -ACGUCGUCAUCUGCGUccGCgGAUAC- -5'
13301 5' -56 NC_003409.1 + 103028 0.7 0.636949
Target:  5'- aUGUGGaAGUAGGCucuggcuaGCGGGCGCCUGg- -3'
miRNA:   3'- -ACGUCgUCAUCUG--------CGUCCGCGGAUac -5'
13301 5' -56 NC_003409.1 + 133031 0.7 0.636949
Target:  5'- uUGCGGUGGUggcagagucGGGCGC-GGUGCCUGg- -3'
miRNA:   3'- -ACGUCGUCA---------UCUGCGuCCGCGGAUac -5'
13301 5' -56 NC_003409.1 + 118876 0.7 0.615987
Target:  5'- aGUGGCGGUGGGCG-GGGCcCCUAUa -3'
miRNA:   3'- aCGUCGUCAUCUGCgUCCGcGGAUAc -5'
13301 5' -56 NC_003409.1 + 40586 0.72 0.533251
Target:  5'- aGUcuAGUAGaGGGCGCGGcGCGCCUGUc -3'
miRNA:   3'- aCG--UCGUCaUCUGCGUC-CGCGGAUAc -5'
13301 5' -56 NC_003409.1 + 75480 0.73 0.493318
Target:  5'- cUGCAGCAGguaUAGACGggaaaCAGGUGUCUAUc -3'
miRNA:   3'- -ACGUCGUC---AUCUGC-----GUCCGCGGAUAc -5'
13301 5' -56 NC_003409.1 + 109849 0.78 0.239009
Target:  5'- cGCGGCGGgAGGCGguGGCGCCc--- -3'
miRNA:   3'- aCGUCGUCaUCUGCguCCGCGGauac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.