Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13301 | 5' | -56 | NC_003409.1 | + | 119959 | 0.66 | 0.849929 |
Target: 5'- cGCGGCGccc-ACGCcGGCGCCUGg- -3' miRNA: 3'- aCGUCGUcaucUGCGuCCGCGGAUac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 67802 | 0.66 | 0.849929 |
Target: 5'- cGCGGUGGgugcGGCGCgcaggGGGCGCCa--- -3' miRNA: 3'- aCGUCGUCau--CUGCG-----UCCGCGGauac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 59253 | 0.66 | 0.841715 |
Target: 5'- gUGCGGCAuacaugccucuGgcGACGUcGGCGCCg--- -3' miRNA: 3'- -ACGUCGU-----------CauCUGCGuCCGCGGauac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 26399 | 0.66 | 0.841715 |
Target: 5'- cGCAcGCAGUGG-CGUAGuCGCCUuaaccuGUGg -3' miRNA: 3'- aCGU-CGUCAUCuGCGUCcGCGGA------UAC- -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 40540 | 0.66 | 0.833302 |
Target: 5'- cGCGGCcGUu--CGguGGCGCCaGUGc -3' miRNA: 3'- aCGUCGuCAucuGCguCCGCGGaUAC- -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 127040 | 0.66 | 0.833302 |
Target: 5'- cGCGGUuGUAGAUGUAGGUcaucGCCa--- -3' miRNA: 3'- aCGUCGuCAUCUGCGUCCG----CGGauac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 20187 | 0.67 | 0.797811 |
Target: 5'- gUGCGGuCAG-AGugGUGGGCGUCa--- -3' miRNA: 3'- -ACGUC-GUCaUCugCGUCCGCGGauac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 43539 | 0.68 | 0.779088 |
Target: 5'- gGCAGCA--GGugGCcGGCGuCCUGg- -3' miRNA: 3'- aCGUCGUcaUCugCGuCCGC-GGAUac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 105247 | 0.68 | 0.749991 |
Target: 5'- uUGUGGCAGuUAGgucagagagcaGCGCuguGGCGCCUGg- -3' miRNA: 3'- -ACGUCGUC-AUC-----------UGCGu--CCGCGGAUac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 134078 | 0.68 | 0.747023 |
Target: 5'- uUGCAGgAGUGGGCuagaguggaaguggGCAGGCaCCUGg- -3' miRNA: 3'- -ACGUCgUCAUCUG--------------CGUCCGcGGAUac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 110025 | 0.69 | 0.709719 |
Target: 5'- gGUGGCAGUGuuGCGcCGGGCGCCa--- -3' miRNA: 3'- aCGUCGUCAUc-UGC-GUCCGCGGauac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 88686 | 0.69 | 0.68913 |
Target: 5'- cUGcCGGCAGgcagGGGCGCGGGgGCUg--- -3' miRNA: 3'- -AC-GUCGUCa---UCUGCGUCCgCGGauac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 92033 | 0.69 | 0.678756 |
Target: 5'- cGUGGCGGUGGGa-CAGGgGCCUAc- -3' miRNA: 3'- aCGUCGUCAUCUgcGUCCgCGGAUac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 60461 | 0.7 | 0.657896 |
Target: 5'- aUGCGGCAGUGGACGUGaaCG-CUGUGa -3' miRNA: 3'- -ACGUCGUCAUCUGCGUccGCgGAUAC- -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 103028 | 0.7 | 0.636949 |
Target: 5'- aUGUGGaAGUAGGCucuggcuaGCGGGCGCCUGg- -3' miRNA: 3'- -ACGUCgUCAUCUG--------CGUCCGCGGAUac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 133031 | 0.7 | 0.636949 |
Target: 5'- uUGCGGUGGUggcagagucGGGCGC-GGUGCCUGg- -3' miRNA: 3'- -ACGUCGUCA---------UCUGCGuCCGCGGAUac -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 118876 | 0.7 | 0.615987 |
Target: 5'- aGUGGCGGUGGGCG-GGGCcCCUAUa -3' miRNA: 3'- aCGUCGUCAUCUGCgUCCGcGGAUAc -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 40586 | 0.72 | 0.533251 |
Target: 5'- aGUcuAGUAGaGGGCGCGGcGCGCCUGUc -3' miRNA: 3'- aCG--UCGUCaUCUGCGUC-CGCGGAUAc -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 75480 | 0.73 | 0.493318 |
Target: 5'- cUGCAGCAGguaUAGACGggaaaCAGGUGUCUAUc -3' miRNA: 3'- -ACGUCGUC---AUCUGC-----GUCCGCGGAUAc -5' |
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13301 | 5' | -56 | NC_003409.1 | + | 109849 | 0.78 | 0.239009 |
Target: 5'- cGCGGCGGgAGGCGguGGCGCCc--- -3' miRNA: 3'- aCGUCGUCaUCUGCguCCGCGGauac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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