Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13302 | 3' | -61.1 | NC_003409.1 | + | 13348 | 0.73 | 0.293432 |
Target: 5'- uAGuCGUCCGGggAgaGGUGUGGGUGCa -3' miRNA: 3'- cUCcGCAGGCCa-UgaCCGCACCCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 26335 | 0.69 | 0.470546 |
Target: 5'- cGGGUGgacgacauccagcucUCCGGUACaGGCGcagGGGUGUa -3' miRNA: 3'- cUCCGC---------------AGGCCAUGaCCGCa--CCCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 26961 | 0.69 | 0.507582 |
Target: 5'- uGGGCGgaUCCGGagggaaggaagGGCG-GGGCGCg -3' miRNA: 3'- cUCCGC--AGGCCauga-------CCGCaCCCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 34136 | 0.66 | 0.660223 |
Target: 5'- uGGGUGUCCGuGagaugcCUGGCGUcGGCGa -3' miRNA: 3'- cUCCGCAGGC-Cau----GACCGCAcCCGCg -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 35626 | 0.66 | 0.670113 |
Target: 5'- gGAGGuCGUCCauauccGUGCUGGuUGUGgaGGUGCu -3' miRNA: 3'- -CUCC-GCAGGc-----CAUGACC-GCAC--CCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 50064 | 1.09 | 0.000866 |
Target: 5'- gGAGGCGUCCGGUACUGGCGUGGGCGCc -3' miRNA: 3'- -CUCCGCAGGCCAUGACCGCACCCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 54377 | 0.67 | 0.620525 |
Target: 5'- gGGGGUucccacGUCgGGauuUGCUGaCGUGGGCGUg -3' miRNA: 3'- -CUCCG------CAGgCC---AUGACcGCACCCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 57494 | 0.66 | 0.660223 |
Target: 5'- -uGGUGUCaGGuUACUGGaCGUGGccaGCGUg -3' miRNA: 3'- cuCCGCAGgCC-AUGACC-GCACC---CGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 65711 | 0.67 | 0.630455 |
Target: 5'- aAGGCGUCCGu--CUGG-GUGGGagaccccaCGCa -3' miRNA: 3'- cUCCGCAGGCcauGACCgCACCC--------GCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 76689 | 0.7 | 0.431459 |
Target: 5'- uGGGgGUUgGGUugUGGCGUGGuG-GCu -3' miRNA: 3'- cUCCgCAGgCCAugACCGCACC-CgCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 87163 | 0.69 | 0.494471 |
Target: 5'- uGGGGUGggUGGUGCgccGGCGgaGGGCGUg -3' miRNA: 3'- -CUCCGCagGCCAUGa--CCGCa-CCCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 102011 | 0.73 | 0.274078 |
Target: 5'- -uGGCGaacacCCGGUAgaUGGCGaGGGCGCg -3' miRNA: 3'- cuCCGCa----GGCCAUg-ACCGCaCCCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 111281 | 0.67 | 0.588837 |
Target: 5'- gGAGGUGUCUguGGUGggcuaaugucuaUGGCGUguggGGGCGUg -3' miRNA: 3'- -CUCCGCAGG--CCAUg-----------ACCGCA----CCCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 119793 | 0.72 | 0.35781 |
Target: 5'- --cGCGUgCCaGGcGCcGGCGUGGGCGCc -3' miRNA: 3'- cucCGCA-GG-CCaUGaCCGCACCCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 123759 | 0.69 | 0.494471 |
Target: 5'- -uGGCG-CCaugGGUGCUGGUGUgugugGGGgGCa -3' miRNA: 3'- cuCCGCaGG---CCAUGACCGCA-----CCCgCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 127119 | 0.72 | 0.325868 |
Target: 5'- aGGGCGcgCCGGUGCUccgucccgaccucaGGCGcauucccggGGGCGCc -3' miRNA: 3'- cUCCGCa-GGCCAUGA--------------CCGCa--------CCCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 133037 | 0.68 | 0.532307 |
Target: 5'- -uGGUGUUugCGGUGgUGGCagaGUcGGGCGCg -3' miRNA: 3'- cuCCGCAG--GCCAUgACCG---CA-CCCGCG- -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 133188 | 0.66 | 0.679975 |
Target: 5'- uAGGUGUCCGGUcCaucCGUGGGCu- -3' miRNA: 3'- cUCCGCAGGCCAuGaccGCACCCGcg -5' |
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13302 | 3' | -61.1 | NC_003409.1 | + | 133308 | 0.66 | 0.670113 |
Target: 5'- aGGGCGUugCCaggaGUGgUGGCGaUGGuGCGCa -3' miRNA: 3'- cUCCGCA--GGc---CAUgACCGC-ACC-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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