miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13302 5' -53.2 NC_003409.1 + 65366 0.66 0.948913
Target:  5'- ----uUUCAGACUCCUuuGCCGuauggguGGAGCCa -3'
miRNA:   3'- cucauGAGUCUGAGGG--UGGU-------CUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 95663 0.66 0.953552
Target:  5'- aGAGgcGCUCAGACUCgaGCCAGu--CCa -3'
miRNA:   3'- -CUCa-UGAGUCUGAGggUGGUCuucGG- -5'
13302 5' -53.2 NC_003409.1 + 85537 0.66 0.957515
Target:  5'- ---cACUgCAGGgUCCCGCCuauAGCCa -3'
miRNA:   3'- cucaUGA-GUCUgAGGGUGGucuUCGG- -5'
13302 5' -53.2 NC_003409.1 + 78553 0.66 0.957515
Target:  5'- ---cACUCgAGcCUCCCggaaacggacGCCAGGAGCUa -3'
miRNA:   3'- cucaUGAG-UCuGAGGG----------UGGUCUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 107657 0.66 0.957515
Target:  5'- uGGUACUCcgcugccaGGGCaUCCCAgUCAGcGGGCCg -3'
miRNA:   3'- cUCAUGAG--------UCUG-AGGGU-GGUC-UUCGG- -5'
13302 5' -53.2 NC_003409.1 + 110460 0.66 0.961241
Target:  5'- cAGUucGC-CAGACUCCUucagaGCCAGGugagcGCCa -3'
miRNA:   3'- cUCA--UGaGUCUGAGGG-----UGGUCUu----CGG- -5'
13302 5' -53.2 NC_003409.1 + 107973 0.66 0.961241
Target:  5'- aGGGaGCUCcagGGGCgugCCCACCGu-GGCCu -3'
miRNA:   3'- -CUCaUGAG---UCUGa--GGGUGGUcuUCGG- -5'
13302 5' -53.2 NC_003409.1 + 42118 0.66 0.961241
Target:  5'- aGAGaUGCUuCAGGCUCU--CCAGGAGUg -3'
miRNA:   3'- -CUC-AUGA-GUCUGAGGguGGUCUUCGg -5'
13302 5' -53.2 NC_003409.1 + 79081 0.66 0.961241
Target:  5'- cGGU-CUCcuGGCagCCCGCCGGAauuuuAGCCa -3'
miRNA:   3'- cUCAuGAGu-CUGa-GGGUGGUCU-----UCGG- -5'
13302 5' -53.2 NC_003409.1 + 90322 0.66 0.964054
Target:  5'- uGGUGCU-GGACUgCCGCCGGcguccagacgccGGCCa -3'
miRNA:   3'- cUCAUGAgUCUGAgGGUGGUCu-----------UCGG- -5'
13302 5' -53.2 NC_003409.1 + 7186 0.66 0.964395
Target:  5'- -uGUG-UCuGACUCCCaACCAGGgcaccagucugcaGGCCa -3'
miRNA:   3'- cuCAUgAGuCUGAGGG-UGGUCU-------------UCGG- -5'
13302 5' -53.2 NC_003409.1 + 102855 0.66 0.964734
Target:  5'- --cUGC-CAGGCgCCCGCUAGccaGAGCCu -3'
miRNA:   3'- cucAUGaGUCUGaGGGUGGUC---UUCGG- -5'
13302 5' -53.2 NC_003409.1 + 123491 0.66 0.964734
Target:  5'- aGGGUGCUCuGucagguuCUCCCAUCGacGAcgcugGGCCg -3'
miRNA:   3'- -CUCAUGAGuCu------GAGGGUGGU--CU-----UCGG- -5'
13302 5' -53.2 NC_003409.1 + 90659 0.66 0.964734
Target:  5'- aGAGUcCUCAGAUUCCgCGCCcGucuGCg -3'
miRNA:   3'- -CUCAuGAGUCUGAGG-GUGGuCuu-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.