Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13303 | 3' | -49.7 | NC_003409.1 | + | 106411 | 0.66 | 0.998039 |
Target: 5'- aCGUUGGgcaCGUugguaAGGUGAUGCUCagCa -3' miRNA: 3'- gGCAAUCaa-GCG-----UCUACUGCGAGagG- -5' |
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13303 | 3' | -49.7 | NC_003409.1 | + | 9248 | 0.66 | 0.997658 |
Target: 5'- cUCGggAGUUCauacuuguuGguGAUGGCGgaCUCUg -3' miRNA: 3'- -GGCaaUCAAG---------CguCUACUGCgaGAGG- -5' |
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13303 | 3' | -49.7 | NC_003409.1 | + | 20601 | 0.67 | 0.99472 |
Target: 5'- cCCGgcGGacuugUCGUuGAUGGCGCU-UCCg -3' miRNA: 3'- -GGCaaUCa----AGCGuCUACUGCGAgAGG- -5' |
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13303 | 3' | -49.7 | NC_003409.1 | + | 109032 | 0.67 | 0.993871 |
Target: 5'- cCCGUUGcacaGaCAGGUGGUGUUCUCCa -3' miRNA: 3'- -GGCAAUcaagC-GUCUACUGCGAGAGG- -5' |
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13303 | 3' | -49.7 | NC_003409.1 | + | 19084 | 0.67 | 0.993871 |
Target: 5'- ---aUGGcccCGCGGAUGGCGCUC-CUg -3' miRNA: 3'- ggcaAUCaa-GCGUCUACUGCGAGaGG- -5' |
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13303 | 3' | -49.7 | NC_003409.1 | + | 45498 | 0.69 | 0.982496 |
Target: 5'- -gGUgcGUUCGCGGuggcgGAcCGCUCUCg -3' miRNA: 3'- ggCAauCAAGCGUCua---CU-GCGAGAGg -5' |
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13303 | 3' | -49.7 | NC_003409.1 | + | 46438 | 0.69 | 0.978043 |
Target: 5'- cCCGUgGGcUUCGCAGc-GugGCUC-CCu -3' miRNA: 3'- -GGCAaUC-AAGCGUCuaCugCGAGaGG- -5' |
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13303 | 3' | -49.7 | NC_003409.1 | + | 10231 | 0.72 | 0.927564 |
Target: 5'- uCCGccaAGUUCGUAGGaGACGCcaUUUCCg -3' miRNA: 3'- -GGCaa-UCAAGCGUCUaCUGCG--AGAGG- -5' |
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13303 | 3' | -49.7 | NC_003409.1 | + | 87704 | 0.74 | 0.86802 |
Target: 5'- cCCG-UGGUUgGCGGAUGcACuuUCUCCg -3' miRNA: 3'- -GGCaAUCAAgCGUCUAC-UGcgAGAGG- -5' |
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13303 | 3' | -49.7 | NC_003409.1 | + | 51087 | 1.16 | 0.004477 |
Target: 5'- cCCGUUAGUUCGCAGAUGACGCUCUCCg -3' miRNA: 3'- -GGCAAUCAAGCGUCUACUGCGAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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