miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13303 3' -49.7 NC_003409.1 + 106411 0.66 0.998039
Target:  5'- aCGUUGGgcaCGUugguaAGGUGAUGCUCagCa -3'
miRNA:   3'- gGCAAUCaa-GCG-----UCUACUGCGAGagG- -5'
13303 3' -49.7 NC_003409.1 + 9248 0.66 0.997658
Target:  5'- cUCGggAGUUCauacuuguuGguGAUGGCGgaCUCUg -3'
miRNA:   3'- -GGCaaUCAAG---------CguCUACUGCgaGAGG- -5'
13303 3' -49.7 NC_003409.1 + 20601 0.67 0.99472
Target:  5'- cCCGgcGGacuugUCGUuGAUGGCGCU-UCCg -3'
miRNA:   3'- -GGCaaUCa----AGCGuCUACUGCGAgAGG- -5'
13303 3' -49.7 NC_003409.1 + 109032 0.67 0.993871
Target:  5'- cCCGUUGcacaGaCAGGUGGUGUUCUCCa -3'
miRNA:   3'- -GGCAAUcaagC-GUCUACUGCGAGAGG- -5'
13303 3' -49.7 NC_003409.1 + 19084 0.67 0.993871
Target:  5'- ---aUGGcccCGCGGAUGGCGCUC-CUg -3'
miRNA:   3'- ggcaAUCaa-GCGUCUACUGCGAGaGG- -5'
13303 3' -49.7 NC_003409.1 + 45498 0.69 0.982496
Target:  5'- -gGUgcGUUCGCGGuggcgGAcCGCUCUCg -3'
miRNA:   3'- ggCAauCAAGCGUCua---CU-GCGAGAGg -5'
13303 3' -49.7 NC_003409.1 + 46438 0.69 0.978043
Target:  5'- cCCGUgGGcUUCGCAGc-GugGCUC-CCu -3'
miRNA:   3'- -GGCAaUC-AAGCGUCuaCugCGAGaGG- -5'
13303 3' -49.7 NC_003409.1 + 10231 0.72 0.927564
Target:  5'- uCCGccaAGUUCGUAGGaGACGCcaUUUCCg -3'
miRNA:   3'- -GGCaa-UCAAGCGUCUaCUGCG--AGAGG- -5'
13303 3' -49.7 NC_003409.1 + 87704 0.74 0.86802
Target:  5'- cCCG-UGGUUgGCGGAUGcACuuUCUCCg -3'
miRNA:   3'- -GGCaAUCAAgCGUCUAC-UGcgAGAGG- -5'
13303 3' -49.7 NC_003409.1 + 51087 1.16 0.004477
Target:  5'- cCCGUUAGUUCGCAGAUGACGCUCUCCg -3'
miRNA:   3'- -GGCAAUCAAGCGUCUACUGCGAGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.